RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 TADA1Q96BN2 335 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 MRGPRX2Q96LB1 330 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 ZNF641Q96N77 438 aaPredicted RBP12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 ACOX2Q99424 681 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 APOL2Q9BQE5 337 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 TDRD1Q9BXT4 1180 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 CPEB1Q9BZB8 566 aaKnown RBP12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 TSPYL1Q9H0U9 437 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 MTG2Q9H4K7 406 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 FBRSQ9HAH7 460 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 ZDHHC4Q9NPG8 344 aa12.11□□□□□ -0.47
SHKBP1-213ENST00000597325 FBN2P35556 2912 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 A0A1W2PQ67 120 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 TCRBV7S3A2A0A539 114 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 C1QTNF3-AMACRE9PGA6 284 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 RNASEH1O60930 286 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 USP12O75317 370 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 PPFIA2O75334 1257 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 NDST3O95803 873 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CPP00450 1065 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 AGTP01019 485 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 FGF1P05230 155 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 UGT2B4P06133 528 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 ATXN1LP0C7T5 689 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 MLNP12872 115 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 NFKBIAP25963 317 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 GKP32189 559 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CDH17Q12864 832 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 TRAF2Q12933 501 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 ENPP2Q13822 863 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 SLC1A5Q15758 541 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 SMAD1Q15797 465 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 C9orf64Q5T6V5 341 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 GDPD4Q6W3E5 623 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 LRRC69Q6ZNQ3 347 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CCDC25Q86WR0 208 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CAMK1DQ8IU85 385 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 GSPT2Q8IYD1 628 aaKnown RBP12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 NDUFAF2Q8N183 169 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 STK40Q8N2I9 435 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 SLC25A41Q8N5S1 370 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 IL17RCQ8NAC3 791 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CHST14Q8NCH0 376 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 LPCAT1Q8NF37 534 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 PTPRN2Q92932 1015 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 PPP1R16AQ96I34 528 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 SERPINB12Q96P63 405 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 GABRG3Q99928 467 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 DYRK4Q9NR20 520 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 ZDHHC18Q9NUE0 388 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 ARGLU1Q9NWB6 273 aaPredicted RBP12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 HCN2Q9UL51 889 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 CHKBQ9Y259 395 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 PCDHGC4Q9Y5F7 938 aa12.1□□□□□ -0.47
SHKBP1-213ENST00000597325 KPNA3O00505 521 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 LEFTY1O75610 366 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 PGLSO95336 258 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 IL1BP01584 269 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 EPOP01588 193 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 XPAP23025 273 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 ADRA1AP35348 466 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 GRIA4P48058 902 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 PSMD8P48556 350 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 SESN2P58004 480 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 RPL26P61254 145 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 CAMK2GQ13555 558 aaPredicted RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 GALNT3Q14435 633 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 BBS9Q3SYG4 887 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 ARSIQ5FYB1 569 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 SIRPB2Q5JXA9 342 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 FAM46CQ5VWP2 391 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 LRRC8BQ6P9F7 803 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 DBX2Q6ZNG2 339 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 TMIEQ8NEW7 156 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 OR52K1Q8NGK4 314 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 PHACTR1Q9C0D0 580 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 NEUROG2Q9H2A3 272 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 SUV39H2Q9H5I1 410 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 CASS4Q9NQ75 786 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 PRSS16Q9NQE7 514 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 BFARQ9NZS9 450 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 SAMD15Q9P1V8 674 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 RAB21Q9UL25 225 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 RPL26L1Q9UNX3 145 aaKnown RBP12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 WASF2Q9Y6W5 498 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 DOPEY1Q5JWR5 2465 aa12.09□□□□□ -0.47
SHKBP1-213ENST00000597325 LRRK2Q5S007 2527 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 LOC285095A0A1B0GVY8 99 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 PLK4O00444 970 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 TP73O15350 636 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 EIF3HO15372 352 aaKnown RBP eCLIP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 HTRA2O43464 458 aaPredicted RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ALDH1A2O94788 518 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 C6P13671 934 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 ECHS1P30084 290 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 POLR2LP62875 67 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 PDIA2Q13087 525 aaKnown RBP12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 MTM1Q13496 603 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 OLIG2Q13516 323 aa12.08□□□□□ -0.48
SHKBP1-213ENST00000597325 SLMAPQ14BN4 828 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms