RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 MYZAPP0CAP1 466 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 GCAP28676 217 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 MSH2P43246 934 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 STC1P52823 247 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 CCDC15Q0P6D6 951 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 TTC31Q49AM3 519 aaPredicted RBP14.64□□□□□ -0.07
VRK3-212ENST00000596814 TEDDM1Q5T9Z0 273 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 TDRPQ86YL5 185 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 RIBC1Q8N443 379 aaPredicted RBP14.64□□□□□ -0.07
VRK3-212ENST00000596814 HDDC3Q8N4P3 179 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 OTUD6BQ8N6M0 293 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 GOLGA6L1Q8N7Z2 621 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 CALML6Q8TD86 181 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 SLC44A1Q8WWI5 657 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 DHRS4Q9BTZ2 278 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 SLC6A17Q9H1V8 727 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 SUDS3Q9H7L9 328 aaPredicted RBP14.64□□□□□ -0.07
VRK3-212ENST00000596814 PSMC3IPQ9P2W1 217 aaPredicted RBP14.64□□□□□ -0.07
VRK3-212ENST00000596814 SCML1Q9UN30 329 aa14.64□□□□□ -0.07
VRK3-212ENST00000596814 OR51F1A6NGY5 319 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 NEMP1O14524 444 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 OPA1O60313 960 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 ATG13O75143 517 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 ELFN1P0C7U0 828 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PTSQ03393 145 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 ZBTB16Q05516 673 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 GPS2Q13227 327 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 FZD5Q13467 585 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 AGBL4Q5VU57 503 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 ZNF470Q6ECI4 717 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 NEPROQ6NW34 567 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PTAR1Q7Z6K3 402 aaPredicted RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 CNTN4Q8IWV2 1026 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 FLCNQ8NFG4 579 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SIPA1Q96FS4 1042 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 NECAB3Q96P71 396 aaPredicted RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 AGAP2Q99490 1192 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SH3GL2Q99962 352 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 OMDQ99983 421 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 NSMCE4AQ9NXX6 385 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PKD2L2Q9NZM6 624 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 TXNDC16Q9P2K2 825 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 CTNNAL1Q9UBT7 734 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SERGEFQ9UGK8 458 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 FNDC3AQ9Y2H6 1198 aaKnown RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 H0Y858 1186 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PSMD11O00231 422 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 STK25O00506 426 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 UGT1A9O60656 530 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 RNASEH2AO75792 299 aaKnown RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 C7P10643 843 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 BPIP17213 487 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 NDUFV2P19404 249 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 MC4RP32245 332 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SPAM1P38567 509 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 DGKEP52429 567 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 ZXDAP98168 799 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 KIAA1324Q6UXG2 1013 aaKnown RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 TRIM67Q6ZTA4 783 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 MICALCLQ6ZW33 695 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SYT13Q7L8C5 426 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 SLC26A11Q86WA9 606 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 LMNTD2Q8IXW0 634 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PJA1Q8NG27 643 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 OR4L1Q8NH43 312 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 GANCQ8TET4 914 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 DCAKDQ8WVC6 231 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 MRGPRX1Q96LB2 322 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 CPNE1Q99829 537 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 WRAP53Q9BUR4 548 aaKnown RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 CENPHQ9H3R5 247 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 UGT1A7Q9HAW7 530 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 UGT1A10Q9HAW8 530 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 UGT1A8Q9HAW9 530 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 POLMQ9NP87 494 aaPredicted RBP14.63□□□□□ -0.07
VRK3-212ENST00000596814 CATSPERZQ9NTU4 200 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 FBXL12Q9NXK8 326 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 FADS3Q9Y5Q0 445 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 LRRK1Q38SD2 2015 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 PLXNA2O75051 1894 aa14.63□□□□□ -0.07
VRK3-212ENST00000596814 AP1G1O43747 822 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 ACADMP11310 421 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 GP5P40197 560 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 SLC1A2P43004 574 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 SPINT3P49223 89 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 PEX6Q13608 980 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 GAS6Q14393 721 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 RASA2Q15283 850 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 TMED2Q15363 201 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 TMEM52BQ4KMG9 183 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 ZDHHC20Q5W0Z9 365 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 ADGRD1Q6QNK2 874 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 FAM151BQ6UXP7 276 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 PACS1Q6VY07 963 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 LIPIQ6XZB0 460 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 HSD11B1LQ7Z5J1 315 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 DENND6AQ8IWF6 608 aa14.62□□□□□ -0.07
VRK3-212ENST00000596814 CBARPQ8N350 705 aaPredicted RBP14.62□□□□□ -0.07
VRK3-212ENST00000596814 CXorf40AQ8TE69 158 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms