RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 ODF2Q5BJF6 829 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 BRAT1Q6PJG6 821 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 LVRNQ6Q4G3 990 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 TAF8Q7Z7C8 310 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 LRRC49Q8IUZ0 686 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 FBXO39Q8N4B4 442 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 ARL14Q8N4G2 192 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 PAF1Q8N7H5 531 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 TUBGCP5Q96RT8 1024 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 CINPQ9BW66 212 aaPredicted RBP12.52□□□□□ -0.41
UPF1-203ENST00000594504 TMEM168Q9H0V1 697 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 LRRN3Q9H3W5 708 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 GOLPH3Q9H4A6 298 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 SP110Q9HB58 689 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 MOSPD1Q9UJG1 213 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 ADGRG1Q9Y653 693 aa12.52□□□□□ -0.41
UPF1-203ENST00000594504 C3orf70A6NLC5 250 aaPredicted RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 PYCARD-AS1I3L0S3 204 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 K7ENP7 123 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 TRAFD1O14545 582 aaPredicted RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 TNNT1P13805 278 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 SERPINA4P29622 427 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 SLC5A2P31639 672 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 UGT1A5P35504 534 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 IL10RBQ08334 325 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 SLC10A7Q0GE19 358 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 MTM1Q13496 603 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 RFTN1Q14699 578 aaPredicted RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 PAFAH1B3Q15102 231 aaKnown RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 PTPRRQ15256 657 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 TGIF1Q15583 401 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 NCBP2-AS2Q69YL0 99 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 INO80CQ6PI98 192 aaPredicted RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 CCDC81Q6ZN84 652 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 RAB11FIP2Q7L804 512 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 CLEC14AQ86T13 490 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 JAMLQ86YT9 394 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 FAM46DQ8NEK8 389 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 GPR156Q8NFN8 814 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 OR56A4Q8NGH8 313 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 WDR48Q8TAF3 677 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 ECHDC3Q96DC8 303 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 ZNF599Q96NL3 588 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 RNF157Q96PX1 679 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 RBM15Q96T37 977 aaKnown RBP eCLIP12.51□□□□□ -0.41
UPF1-203ENST00000594504 TSGA10Q9BZW7 698 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 ATP13A3Q9H7F0 1226 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 SUDS3Q9H7L9 328 aaPredicted RBP12.51□□□□□ -0.41
UPF1-203ENST00000594504 CYP4F12Q9HCS2 524 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 FGF22Q9HCT0 170 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.51□□□□□ -0.41
UPF1-203ENST00000594504 PCDHGC4Q9Y5F7 938 aa12.51□□□□□ -0.41
UPF1-203ENST00000594504 PTPRQQ9UMZ3 2332 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 A0A0U1RQS6 177 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 MACROD2A1Z1Q3 448 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 PLD2O14939 933 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 MFSD11O43934 449 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 NOBOXO60393 691 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 FUCA1P04066 466 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 ELFN1P0C7U0 828 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 ITIH1P19827 911 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 INHBCP55103 352 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 CCZ1BP86790 482 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 CCZ1P86791 482 aaPredicted RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 ACOX1Q15067 660 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 DENND2CQ68D51 928 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 PNCKQ6P2M8 343 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 OGFOD3Q6PK18 319 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 DPPA4Q7L190 304 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 TMPRSS9Q7Z410 1059 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 KATNAL2Q8IYT4 538 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 PGBD5Q8N414 524 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 ATPAF2Q8N5M1 289 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 PQLC3Q8N755 202 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 LRRC57Q8N9N7 239 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 KIAA1524Q8TCG1 905 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 SNRNP27Q8WVK2 155 aaKnown RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 RNF25Q96BH1 459 aaPredicted RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 CCDC97Q96F63 343 aaPredicted RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 LIN37Q96GY3 246 aaPredicted RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 DPEP2Q9H4A9 486 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.5□□□□□ -0.41
UPF1-203ENST00000594504 B4GALT6Q9UBX8 382 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 TRIM10Q9UDY6 481 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 DGKBQ9Y6T7 804 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 RNF215Q9Y6U7 377 aa12.5□□□□□ -0.41
UPF1-203ENST00000594504 BPTFQ12830 3046 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 A0A0U1RQJ8 604 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 GRID2IPA4D2P6 1211 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CFAP69A5D8W1 941 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 B4DGG1 531 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 D6RAR5 112 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CACNB4O00305 520 aaPredicted RBP12.49□□□□□ -0.41
UPF1-203ENST00000594504 KRT86O43790 486 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 MAFKO60675 156 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 ZRANB2O95218 330 aaKnown RBP eCLIP12.49□□□□□ -0.41
UPF1-203ENST00000594504 ITGA2BP08514 1039 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 CCDC175P0C221 793 aa12.49□□□□□ -0.41
UPF1-203ENST00000594504 ZFXP17010 805 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms