RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 FOXK2Q01167 660 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 PFKPQ01813 784 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 TRAF2Q12933 501 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 CTBP1Q13363 440 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 GALNT3Q14435 633 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 QPCTQ16769 361 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 TSNAXIP1Q2TAA8 658 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 MYLK3Q32MK0 819 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 LY6G5CQ5SRR4 150 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 N4BP2L1Q5TBK1 243 aaPredicted RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 TANGO2Q6ICL3 276 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 AFTPHQ6ULP2 937 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 GLT6D1Q7Z4J2 308 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 SPATA21Q7Z572 469 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 CLEC14AQ86T13 490 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 AHI1Q8N157 1196 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 ARMC2Q8NEN0 867 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 LPCAT1Q8NF37 534 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 OR2AP1Q8NGE2 309 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 OR4L1Q8NH43 312 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 OSCP1Q8WVF1 389 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 BHMTQ93088 406 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 CDKN2AIPNLQ96HQ2 116 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 ZSWIM3Q96MP5 696 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 ZNF641Q96N77 438 aaPredicted RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 RABEP2Q9H5N1 569 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 TRPV4Q9HBA0 871 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 INTS10Q9NVR2 710 aaKnown RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 THG1LQ9NWX6 298 aaKnown RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 DUS2Q9NX74 493 aaKnown RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 PLK2Q9NYY3 685 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 IL1RAPL1Q9NZN1 696 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 SIRPGQ9P1W8 387 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 KLHL14Q9P2G3 628 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 INTS6Q9UL03 887 aaKnown RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 SLC39A10Q9ULF5 831 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 PHTF1Q9UMS5 762 aa10.4□□□□□ -0.74
LIG3-203ENST00000585370 FCF1Q9Y324 198 aaKnown RBP10.4□□□□□ -0.74
LIG3-203ENST00000585370 FAM95CA0A1B0GW59 222 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 CCDC78A2IDD5 438 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 NEDD8-MDP1E9PL57 170 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 H7C0S8 307 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 STX7O15400 261 aaKnown RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 HOXC11O43248 304 aaPredicted RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 H2AFYO75367 372 aaKnown RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 KIAA0754O94854 1291 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PRAMEF12O95522 483 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 NFATC1O95644 943 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 S1PR4O95977 384 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 MT-CO1P00395 513 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 ATP5BP06576 529 aaKnown RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 SRCP12931 536 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 GRK2P25098 689 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 GABRB3P28472 473 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PMLP29590 882 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 SERPINA4P29622 427 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 HLA-FP30511 346 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 ID4P47928 161 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 ZNF140P52738 457 aaPredicted RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 ASPHQ12797 758 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 FZD5Q13467 585 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 UBXN2BQ14CS0 331 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PDGFRLQ15198 375 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 DHCR24Q15392 516 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 FASTKD1Q53R41 847 aaKnown RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 CARD16Q5EG05 197 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 AARS2Q5JTZ9 985 aaKnown RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 RNF187Q5TA31 235 aaPredicted RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 FAM45BPQ6NSW5 357 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 C6orf89Q6UWU4 347 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 CDHR3Q6ZTQ4 885 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 RAPH1Q70E73 1250 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PTAR1Q7Z6K3 402 aaPredicted RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 DENND6AQ8IWF6 608 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 OTUD6BQ8N6M0 293 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 CCDC63Q8NA47 563 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 FAM45AQ8TCE6 357 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 BPIFB1Q8TDL5 484 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PIH1D2Q8WWB5 315 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 SMARCD2Q92925 531 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 ELSPBP1Q96BH3 223 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 MYO19Q96H55 970 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 EXOC2Q96KP1 924 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 TBATAQ96M53 351 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 TTC1Q99614 292 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 TSSK1BQ9BXA7 367 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 OSBPL6Q9BZF3 934 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 LINC00597Q9H2U6 94 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 POPDC3Q9HBV1 291 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 LTB4R2Q9NPC1 389 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 CATSPERZQ9NTU4 200 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 SPATA6Q9NWH7 488 aaPredicted RBP10.39□□□□□ -0.75
LIG3-203ENST00000585370 SLC17A6Q9P2U8 582 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 CLEC4EQ9ULY5 219 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 SLC27A6Q9Y2P4 619 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 VWA7Q9Y334 891 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PPIL1Q9Y3C6 166 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 PKP3Q9Y446 797 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 ARL5AQ9Y689 179 aa10.39□□□□□ -0.75
LIG3-203ENST00000585370 COMMD10Q9Y6G5 202 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms