RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 CDC6Q99741 560 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FAM118BQ9BPY3 351 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 USB1Q9BQ65 265 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SGIP1Q9BQI5 828 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HERC2P3Q9BVR0 1158 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC2A11Q9BYW1 496 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 IL22Q9GZX6 179 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 THAP2Q9H0W7 228 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RNF39Q9H2S5 420 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SUV39H2Q9H5I1 410 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PTGES2Q9H7Z7 377 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KCNMB3Q9NPA1 279 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CCDC177Q9NQR7 707 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KLC4Q9NSK0 619 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DDX18Q9NVP1 670 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NAALADL1Q9UQQ1 740 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CHKBQ9Y259 395 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PCDHB1Q9Y5F3 818 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TOPAZ1Q8N9V7 1692 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NCANO14594 1321 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SIGLEC16A6NMB1 481 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GRXCR1A8MXD5 290 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TRIM49D1C9J1S8 452 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLCO1B7G3V0H7 640 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PEX1O43933 1283 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 REM1O75628 298 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NDST3O95803 873 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CCNE2O96020 404 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CYB5AP00167 134 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CCDC159P0C7I6 412 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NR2F1P10589 423 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HAPLN1P10915 354 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ENO3P13929 434 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NQO1P15559 274 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ADRA1DP25100 572 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ADRA1BP35368 520 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GLRBP48167 497 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC7A2P52569 658 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ZNF143P52747 638 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PMS1P54277 932 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MAXP61244 160 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ACY1Q03154 408 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MBTD1Q05BQ5 628 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ZNF155Q12901 538 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PRKG2Q13237 762 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SMAD4Q13485 552 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CYLC2Q14093 348 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 HNRNPDQ14103 355 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SLC25A52Q3SY17 297 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 PKDCCQ504Y2 493 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 LRRC23Q53EV4 343 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SPANXN3Q5MJ09 141 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MAMDC4Q6UXC1 1216 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KDM7AQ6ZMT4 941 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 RFX8Q6ZV50 586 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FAM183BPQ6ZVS7 135 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 UBE2R2Q712K3 238 aaPredicted RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 METTL16Q86W50 562 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 C12orf40Q86WS4 652 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SNX32Q86XE0 403 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CMTM8Q8IZV2 173 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 MPP5Q8N3R9 675 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 OR7D4Q8NG98 312 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ZCCHC10Q8TBK6 192 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 CYB5D2Q8WUJ1 264 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 NACC2Q96BF6 587 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ERGIC2Q96RQ1 377 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 GMLQ99445 158 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 SH3GL3Q99963 347 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DEFB126Q9BYW3 111 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 REXO4Q9GZR2 422 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 LRMDAQ9H2I8 198 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 TBC1D17Q9HA65 648 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 AMACRQ9UHK6 382 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 DCTN4Q9UJW0 460 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 KLHL20Q9Y2M5 609 aa2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 FCF1Q9Y324 198 aaKnown RBP2.93□□□□□ -1.94
SMCHD1-203ENST00000577880 ATXN2Q99700 1313 aaKnown RBP2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 MYBPHLA2RUH7 354 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 OR2AG2A6NM03 316 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 AP3D1O14617 1153 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 MAP2K7O14733 419 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 TSPAN6O43657 245 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 PI15O43692 258 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 LILRB3O75022 631 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 ABCB7O75027 752 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 TMCC2O75069 709 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 ATG7O95352 703 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 KRT75O95678 551 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 ABOP16442 354 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 POU1F1P28069 291 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 S100GP29377 79 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 SERPINB3P29508 390 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 ARL2P36404 184 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 GP5P40197 560 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 CSKP41240 450 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 GDI2P50395 445 aaKnown RBP2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 RRADP55042 308 aa2.92□□□□□ -1.94
SMCHD1-203ENST00000577880 CDK16Q00536 496 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms