RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SPXQ9BT56 116 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 THUMPD3Q9BV44 507 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 CCSER1Q9C0I3 900 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 THAP9Q9H5L6 903 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 LIN28AQ9H9Z2 209 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 XPNPEP1Q9NQW7 623 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 PAPOLBQ9NRJ5 636 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 C5AR2Q9P296 337 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 MARCH4Q9P2E8 410 aaPredicted RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 LARSQ9P2J5 1176 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 STK39Q9UEW8 545 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 HSF4Q9ULV5 492 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 DNAJC16Q9Y2G8 782 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 PCDHB2Q9Y5E7 798 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CLIC4Q9Y696 253 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 AP1M2Q9Y6Q5 423 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 TDRD15B5MCY1 1934 aaKnown RBP6.26□□□□□ -1.41
VPS53-212ENST00000572259 CITO14578 2027 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CHD9Q3L8U1 2897 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 PRUNE2Q8WUY3 3088 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 CDH23Q9H251 3354 aa6.26□□□□□ -1.41
VPS53-212ENST00000572259 MYH15Q9Y2K3 1946 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 A0A1B0GUA9 196 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 ARHGAP10A1A4S6 786 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 PP2D1A8MPX8 630 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 E9PMD0 336 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 H0YAE9 185 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 BTN3A1O00481 513 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 TEX33O43247 280 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 HOXA3O43365 443 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 NOL3O60936 208 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 PPP6R2O75170 966 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 YEATS4O95619 227 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 PNPP00491 289 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 RAP2AP10114 183 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 C6P13671 934 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 DDCP20711 480 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MALP21145 153 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 IL4RP24394 825 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 HOXA11P31270 313 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 ALDH18A1P54886 795 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 HDAC4P56524 1084 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 PEX3P56589 373 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 SP140Q13342 867 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 CAPSQ13938 189 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 NAA25Q14CX7 972 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 ZKSCAN8Q15776 578 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 TBCCQ15814 346 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 IL17AQ16552 155 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 NOMO2Q5JPE7 1267 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 SLC27A1Q6PCB7 646 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 DENND5BQ6ZUT9 1274 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 C1orf186Q6ZWK4 172 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 USP49Q70CQ1 688 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 RRAGAQ7L523 313 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MRPL10Q7Z7H8 261 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 GLRX5Q86SX6 157 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 TMEM110Q86TL2 294 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 CIR1Q86X95 450 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 SCML4Q8N228 414 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 GALNT4Q8N4A0 578 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 DPP10Q8N608 796 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 GDPD5Q8WTR4 605 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 CTNNBL1Q8WYA6 563 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 ARHGEF2Q92974 986 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 MRPL38Q96DV4 380 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 ZNF558Q96NG5 402 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 PLIN2Q99541 437 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 VRK1Q99986 396 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 MMTAG2Q9BU76 263 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 FUT8Q9BYC5 575 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 ENKD1Q9H0I2 346 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MEGF9Q9H1U4 602 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 CHST8Q9H2A9 424 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 FZD8Q9H461 694 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 CHODLQ9H9P2 273 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MID1IP1Q9NPA3 183 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 HEYLQ9NQ87 328 aaPredicted RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 COQ3Q9NZJ6 369 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 SELENONQ9NZV5 590 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MRPL15Q9P015 296 aaKnown RBP6.25□□□□□ -1.41
VPS53-212ENST00000572259 PPP4R1LQ9P1A2 415 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 EXTL2Q9UBQ6 330 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 NAALADL1Q9UQQ1 740 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 MTCH2Q9Y6C9 303 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 COL4A6Q14031 1691 aa6.25□□□□□ -1.41
VPS53-212ENST00000572259 C2orf81A6NN90 581 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 A8MVJ9 347 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 E7EVH7 732 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 PYCARD-AS1I3L0S3 204 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TSPAN1O60635 241 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 KINO60870 393 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 TUBB4AP04350 444 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 HEXBP07686 556 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 DLDP09622 509 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 UBL4AP11441 157 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 CYP2A6P11509 494 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 ARF4P18085 180 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 IL1R2P27930 398 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 GCH1P30793 250 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms