RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CDK16Q00536 496 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 SEMA5AQ13591 1074 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 TRIP6Q15654 476 aaKnown RBP20.61■□□□□ 0.89
VPS53-210ENST00000571456 SLC1A5Q15758 541 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 QPCTQ16769 361 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 RANBP10Q6VN20 620 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 CDH19Q9H159 772 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 ARNT2Q9HBZ2 717 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 FSCN3Q9NQT6 498 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 EIF2B3Q9NR50 452 aaKnown RBP20.61■□□□□ 0.89
VPS53-210ENST00000571456 RAD18Q9NS91 495 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 UBP1Q9NZI7 540 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 LRRK1Q38SD2 2015 aa20.61■□□□□ 0.89
VPS53-210ENST00000571456 ATXN2Q99700 1313 aaKnown RBP20.6■□□□□ 0.89
VPS53-210ENST00000571456 A0A1B0GTW7 788 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 E7EVH7 732 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 HEXIM1O94992 359 aaKnown RBP20.6■□□□□ 0.89
VPS53-210ENST00000571456 METTL18O95568 372 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 PRB1P04280 392 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 CD59P13987 128 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 ADRA1AP35348 466 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 HNF1BP35680 557 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 LIG3P49916 1009 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 PPP2CBP62714 309 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 PPP2CAP67775 309 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 RALGDSQ12967 914 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 TEAD4Q15561 434 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 WHAMMP3Q1A5X7 153 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 DUOXA1Q1HG43 343 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 KCTD11Q693B1 232 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 LIPIQ6XZB0 460 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 ZNF572Q7Z3I7 529 aaPredicted RBP20.6■□□□□ 0.89
VPS53-210ENST00000571456 IQCHQ86VS3 1027 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 SNX19Q92543 992 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 C19orf43Q9BQ61 176 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 EIF2B4Q9UI10 523 aaKnown RBP20.6■□□□□ 0.89
VPS53-210ENST00000571456 ZFR2Q9UPR6 939 aaKnown RBP20.6■□□□□ 0.89
VPS53-210ENST00000571456 HS3ST3A1Q9Y663 406 aa20.6■□□□□ 0.89
VPS53-210ENST00000571456 DOCK9Q9BZ29 2069 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 NPIPB15A6NHN6 443 aaPredicted RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 BCAT2O15382 392 aaPredicted RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 LZTS3O60299 673 aaPredicted RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 SUN1O94901 812 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 KRT14P02533 472 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 FTH1P19P0C7X4 201 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 C6P13671 934 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 ITPKAP23677 461 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 RPL22P35268 128 aaKnown RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 AFF3P51826 1226 aaKnown RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 PDE1BQ01064 536 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 DHX34Q14147 1143 aaKnown RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 TTC27Q6P3X3 843 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 NLRP8Q86W28 1048 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 CBARPQ8N350 705 aaPredicted RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 MINDY1Q8N5J2 469 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 PNPLA1Q8N8W4 532 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 C1orf216Q8TAB5 229 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 UBL7Q96S82 380 aaPredicted RBP20.59■□□□□ 0.89
VPS53-210ENST00000571456 TBL1YQ9BQ87 522 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 GORASP1Q9BQQ3 440 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 ETNK1Q9HBU6 452 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 RAB6BQ9NRW1 208 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 SMARCAL1Q9NZC9 954 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 ITM2BQ9Y287 266 aa20.59■□□□□ 0.89
VPS53-210ENST00000571456 HECTD1Q9ULT8 2610 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 SPTA1P02549 2419 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 IGLON5A6NGN9 336 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 CYSRT1A8MQ03 144 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 NDC80O14777 642 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 MMP20O60882 483 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 PPFIA2O75334 1257 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 URI1O94763 535 aaPredicted RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 PYGLP06737 847 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 ATXN1LP0C7T5 689 aaKnown RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 LMAN1P49257 510 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 SARNPP82979 210 aaKnown RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 GALNT3Q14435 633 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 STAT4Q14765 748 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 PPP1R7Q15435 360 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 CNGA3Q16281 694 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 LRRC73Q5JTD7 316 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 SIRPB2Q5JXA9 342 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 ARMC3Q5W041 872 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 ZDHHC20Q5W0Z9 365 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 SEL1L3Q68CR1 1132 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 DCP2Q8IU60 420 aaKnown RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 NRSN1Q8IZ57 195 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 SERAC1Q96JX3 654 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 CAMK1GQ96NX5 476 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 ORAI3Q9BRQ5 295 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 WRAP53Q9BUR4 548 aaKnown RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 FICDQ9BVA6 458 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 DDX47Q9H0S4 455 aaKnown RBP20.58■□□□□ 0.89
VPS53-210ENST00000571456 ZFYVE1Q9HBF4 777 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 CAPN10Q9HC96 672 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 DKK4Q9UBT3 224 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 GGT7Q9UJ14 662 aa20.58■□□□□ 0.89
VPS53-210ENST00000571456 C1orf232A0A0U1RR37 186 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 FPGTO14772 594 aa20.57■□□□□ 0.88
VPS53-210ENST00000571456 PLXNA2O75051 1894 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms