RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF248Q8NDW4 579 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 DNAAF4Q8WXU2 420 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 ABTB1Q969K4 478 aaPredicted RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 HARBI1Q96MB7 349 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 QRFPRQ96P65 431 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 NEURL2Q9BR09 285 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 SYT17Q9BSW7 474 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 HAUS8Q9BT25 410 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 RBM4Q9BWF3 364 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 IFIH1Q9BYX4 1025 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 PPCSQ9HAB8 311 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 UPF2Q9HAU5 1272 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 MKKSQ9NPJ1 570 aaPredicted RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 RIC8AQ9NPQ8 531 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 HINT3Q9NQE9 182 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 KLHL1Q9NR64 748 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 TMEM30AQ9NV96 361 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 TMEM160Q9NX00 188 aa2.83□□□□□ -1.96
VPS35-207ENST00000568191 RALYQ9UKM9 306 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 LSM4Q9Y4Z0 139 aaKnown RBP2.83□□□□□ -1.96
VPS35-207ENST00000568191 TEX13CA0A0J9YWL9 993 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 ZG16O60844 167 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 PAK4O96013 591 aaPredicted RBP2.82□□□□□ -1.96
VPS35-207ENST00000568191 LDLRP01130 860 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 COX7A2P14406 83 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 S1PR1P21453 382 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 EIF2S3P41091 472 aaKnown RBP2.82□□□□□ -1.96
VPS35-207ENST00000568191 AMPHP49418 695 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 PPFIA1Q13136 1202 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 ZNF772Q68DY9 489 aaPredicted RBP2.82□□□□□ -1.96
VPS35-207ENST00000568191 SIGIRRQ6IA17 410 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 SLC35E4Q6ICL7 350 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 SLC27A1Q6PCB7 646 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 GFRALQ6UXV0 394 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 BBS12Q6ZW61 710 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 GSTA5Q7RTV2 222 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 EPHX4Q8IUS5 362 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 CHERPQ8IWX8 916 aaKnown RBP2.82□□□□□ -1.96
VPS35-207ENST00000568191 SPATA6LQ8N4H0 392 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 ZBTB2Q8N680 514 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 SPATA22Q8NHS9 363 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 BBS10Q8TAM1 723 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 SLC20A1Q8WUM9 679 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 NEUROD6Q96NK8 337 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 VEZTQ9HBM0 779 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 C20orf141Q9NUB4 165 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 TAF1P21675 1872 aa2.82□□□□□ -1.96
VPS35-207ENST00000568191 WDR81Q562E7 1941 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 IGKV3D-15A0A087WSY6 115 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 LRRC53A6NM62 1247 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 SEC14L5O43304 696 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TACC1O75410 805 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 AMBPP02760 352 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 URODP06132 367 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TUBBP07437 444 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 INHBAP08476 426 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 HOXB5P09067 269 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CFC1BP0CG36 223 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CFC1P0CG37 223 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 PAX1P15863 534 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 ZNF23P17027 643 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TIMP3P35625 211 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 GNAQP50148 359 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 EFNA5P52803 228 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TUBB4BP68371 445 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CSNK2A1P68400 391 aaPredicted RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 GRIK3Q13003 919 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 NAE1Q13564 534 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 GRAMD1BQ3KR37 738 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TMEM30BQ3MIR4 351 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 SGO1Q5FBB7 561 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 ZNF667Q5HYK9 610 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 DUS1LQ6P1R4 473 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 LCTLQ6UWM7 567 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CEACAM20Q6UY09 585 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 ZNF852Q6ZMS4 543 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 SLC46A3Q7Z3Q1 461 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 NOXA1Q86UR1 476 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 GPR180Q86V85 440 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TMEM219Q86XT9 240 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 TDRPQ86YL5 185 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 NKAPQ8N5F7 415 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 CSNK2A3Q8NEV1 391 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 SLC24A4Q8NFF2 622 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CADM4Q8NFZ8 388 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 OR10V1Q8NGI7 309 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 HUS1BQ8NHY5 278 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 FAM76AQ8TAV0 307 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 PIGTQ969N2 578 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 KIF1BPQ96EK5 621 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 F2RL3Q96RI0 385 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 CMKLR1Q99788 373 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 HERPUD2Q9BSE4 406 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 POLR3CQ9BUI4 534 aaPredicted RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 RANBP17Q9H2T7 1088 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 ESRP2Q9H6T0 727 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 PPP1R3EQ9H7J1 279 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 DDX43Q9NXZ2 648 aaKnown RBP2.81□□□□□ -1.96
VPS35-207ENST00000568191 OGFRQ9NZT2 677 aa2.81□□□□□ -1.96
VPS35-207ENST00000568191 MPP6Q9NZW5 540 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms