RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NPIPB15A6NHN6 443 aaPredicted RBP17.1■□□□□ 0.33
CLN3-216ENST00000565316 B4GAT1O43505 415 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 FGF1P05230 155 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 SERPINB6P35237 376 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 CDK3Q00526 305 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 DPTQ07507 201 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 ZSCAN23Q3MJ62 389 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 JAMLQ86YT9 394 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 NSMCE1Q8WV22 266 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 PIH1D2Q8WWB5 315 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 SCARF2Q96GP6 870 aaPredicted RBP17.1■□□□□ 0.33
CLN3-216ENST00000565316 FUCA2Q9BTY2 467 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 GSDMCQ9BYG8 508 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.1■□□□□ 0.33
CLN3-216ENST00000565316 RCOR3Q9P2K3 495 aaPredicted RBP17.1■□□□□ 0.33
CLN3-216ENST00000565316 PISDQ9UG56 409 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 IP6K2Q9UHH9 426 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 MOSPD1Q9UJG1 213 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 SLC17A4Q9Y2C5 497 aa17.1■□□□□ 0.33
CLN3-216ENST00000565316 A0A1W2PQJ5 194 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 FZD6O60353 706 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 CYP1A2P05177 515 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 JMJD7P0C870 316 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 PBX1P40424 430 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 MAXP61244 160 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 ILF3Q12906 894 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-216ENST00000565316 LY6DQ14210 128 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 CLPPQ16740 277 aaPredicted RBP17.09■□□□□ 0.33
CLN3-216ENST00000565316 ARMC12Q5T9G4 340 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 KIAA1614Q5VZ46 1190 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 Q6ZVL8 140 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 TSPAN33Q86UF1 283 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 PTCD2Q8WV60 388 aaKnown RBP17.09■□□□□ 0.33
CLN3-216ENST00000565316 MED8Q96G25 268 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 B3GNT4Q9C0J1 378 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 THAP2Q9H0W7 228 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 TAAR2Q9P1P5 351 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 SUFUQ9UMX1 484 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 ST14Q9Y5Y6 855 aa17.09■□□□□ 0.33
CLN3-216ENST00000565316 ARHGEF17Q96PE2 2063 aaPredicted RBP17.09■□□□□ 0.33
CLN3-216ENST00000565316 SCN8AQ9UQD0 1980 aa17.08■□□□□ 0.33
CLN3-216ENST00000565316 SOD1P00441 154 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 SERPINC1P01008 464 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 IVLP07476 585 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 ARSEP51690 589 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 MAZP56270 477 aaKnown RBP17.08■□□□□ 0.32
CLN3-216ENST00000565316 PTPRRQ15256 657 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 DENND2CQ68D51 928 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 ALG1LQ6GMV1 187 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 ADAMTSL4Q6UY14 1074 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 USP45Q70EL2 814 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 NLRP8Q86W28 1048 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 ZDHHC1Q8WTX9 485 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 BTBD6Q96KE9 485 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 CMKLR1Q99788 373 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 NUP85Q9BW27 656 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 SEMA6CQ9H3T2 930 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 NT5MQ9NPB1 228 aa17.08■□□□□ 0.32
CLN3-216ENST00000565316 CPNE6O95741 557 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 SERPING1P05155 500 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 PDHA1P08559 390 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 LIPCP11150 499 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 ITIH1P19827 911 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 AK4P27144 223 aaPredicted RBP17.07■□□□□ 0.32
CLN3-216ENST00000565316 ADCY8P40145 1251 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 ETV5P41161 510 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 GPR3P46089 330 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 GNPDA1P46926 289 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 POLD2P49005 469 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 OR1D5P58170 312 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 CTBSQ01459 385 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 IHHQ14623 411 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 TGIF1Q15583 401 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 TDRD12Q587J7 1177 aaKnown RBP17.07■□□□□ 0.32
CLN3-216ENST00000565316 RAET1GQ6H3X3 334 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 MAML1Q92585 1016 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 FATE1Q969F0 183 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 SEMA3CQ99985 751 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 ANAPC7Q9UJX3 599 aa17.07■□□□□ 0.32
CLN3-216ENST00000565316 TLN1Q9Y490 2541 aaKnown RBP17.07■□□□□ 0.32
CLN3-216ENST00000565316 A0A087X0T9 212 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 PRAMEF33A0A0G2JMD5 474 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 RHPN2P1A8MT19 583 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 PRAMEF10O60809 474 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 ZIC2O95409 532 aaPredicted RBP17.06■□□□□ 0.32
CLN3-216ENST00000565316 ECEL1O95672 775 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 CD48P09326 243 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 FAM228BP0C875 321 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 KRT10P13645 584 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 CTPS1P17812 591 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 CES1P23141 567 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 GARSP41250 739 aaKnown RBP17.06■□□□□ 0.32
CLN3-216ENST00000565316 PTSQ03393 145 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 GALNT2Q10471 571 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 MMRN1Q13201 1228 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 SQSTM1Q13501 440 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 PEX6Q13608 980 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 KRT81Q14533 505 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 C16orf72Q14CZ0 275 aa17.06■□□□□ 0.32
CLN3-216ENST00000565316 PHF19Q5T6S3 580 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms