RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CNTD1Q8N815 330 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 NSMCE1Q8WV22 266 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 RNF157Q96PX1 679 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 WDR24Q96S15 920 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 TEX101Q9BY14 249 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 FRMD8Q9BZ67 464 aaPredicted RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 GOLPH3Q9H4A6 298 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 DEF6Q9H4E7 631 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 PRORYQ9H606 182 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 CARS2Q9HA77 564 aaKnown RBP17.71■□□□□ 0.43
HDDC3-205ENST00000559898 GOLGA6AQ9NYA3 693 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 TMEM98Q9Y2Y6 226 aa17.71■□□□□ 0.43
HDDC3-205ENST00000559898 PTPRQQ9UMZ3 2332 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 ZFC3H1O60293 1989 aaKnown RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 UNC13CQ8NB66 2214 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 A0A0J9YYE9 177 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 CLDN7O95471 211 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 JCHAINP01591 159 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TRBC1P01850 177 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 RPLP0P05388 317 aaKnown RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 CYP2A6P11509 494 aaPredicted RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TNNT1P13805 278 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 HGFP14210 728 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 CCNB1P14635 433 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 CCNCP24863 283 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 ACTN2P35609 894 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 GNPDA1P46926 289 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 RPIAP49247 311 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TLE3Q04726 772 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TBX2Q13207 712 aaPredicted RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 IFI16Q16666 785 aaKnown RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 RAET1GQ6H3X3 334 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 OGFOD3Q6PK18 319 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 LVRNQ6Q4G3 990 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 BBS5Q8N3I7 341 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 GLMNQ92990 594 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TSGA13Q96PP4 275 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 TDRD1Q9BXT4 1180 aaKnown RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 POLR1EQ9GZS1 481 aaKnown RBP17.7■□□□□ 0.42
HDDC3-205ENST00000559898 EVA1BQ9NVM1 165 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 NCKIPSDQ9NZQ3 722 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 SUFUQ9UMX1 484 aa17.7■□□□□ 0.42
HDDC3-205ENST00000559898 LRRD1A4D1F6 860 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 TNFRSF10CO14798 259 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 CBFA2T2O43439 604 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 DXOO77932 396 aaKnown RBP17.69■□□□□ 0.42
HDDC3-205ENST00000559898 PRB1P04280 392 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 MAN1A1P33908 653 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 NOP2P46087 812 aaKnown RBP17.69■□□□□ 0.42
HDDC3-205ENST00000559898 SPIDRQ14159 915 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 ZFYVE27Q5T4F4 411 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 CCNYQ8ND76 341 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 LPCAT1Q8NF37 534 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 TPCN2Q8NHX9 752 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 NAT6Q93015 286 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 RNF25Q96BH1 459 aaPredicted RBP17.69■□□□□ 0.42
HDDC3-205ENST00000559898 HEY1Q9Y5J3 304 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 MGAQ8IWI9 3026 aa17.69■□□□□ 0.42
HDDC3-205ENST00000559898 FGF1P05230 155 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 KRT7P08729 469 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 PTMSP20962 102 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 CD86P42081 329 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 STC1P52823 247 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 SKOR1P84550 965 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 ADCY2Q08462 1091 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 TRIM14Q14142 442 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 ARHGEF7Q14155 803 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 HLTFQ14527 1009 aaKnown RBP eCLIP17.68■□□□□ 0.42
HDDC3-205ENST00000559898 SKOR2Q2VWA4 1001 aaPredicted RBP17.68■□□□□ 0.42
HDDC3-205ENST00000559898 RALGPS1Q5JS13 557 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 CERCAMQ5T4B2 595 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 LRRC69Q6ZNQ3 347 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 USP45Q70EL2 814 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 LRRC49Q8IUZ0 686 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 CCDC13Q8IYE1 715 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 ATL2Q8NHH9 583 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 GPBAR1Q8TDU6 330 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 SCG3Q8WXD2 468 aaKnown RBP17.68■□□□□ 0.42
HDDC3-205ENST00000559898 EID2BQ96D98 161 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 HDAC11Q96DB2 347 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 SLC46A1Q96NT5 459 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 LRRN3Q9H3W5 708 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 DPEP2Q9H4A9 486 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 CPNE5Q9HCH3 593 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 EPB41L5Q9HCM4 733 aa17.68■□□□□ 0.42
HDDC3-205ENST00000559898 PHPT1Q9NRX4 125 aaPredicted RBP17.68■□□□□ 0.42
HDDC3-205ENST00000559898 OAS3Q9Y6K5 1087 aaKnown RBP17.68■□□□□ 0.42
HDDC3-205ENST00000559898 A0A1W2PQ67 120 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 D6RAR5 112 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 INPP4BO15327 924 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 RRP8O43159 456 aaKnown RBP17.67■□□□□ 0.42
HDDC3-205ENST00000559898 TCEA3O75764 348 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 MTA2O94776 668 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 KRT1P04264 644 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 TPM3P06753 285 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 PIRTP0C851 137 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 GPR1P46091 355 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 DYNLT1P63172 113 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 CTBSQ01459 385 aa17.67■□□□□ 0.42
HDDC3-205ENST00000559898 PPIDQ08752 370 aaKnown RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms