RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 GALNT3Q14435 633 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 TAF1AQ15573 450 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-234ENST00000557703 PNCKQ6P2M8 343 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 SYT10Q6XYQ8 523 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 GCNT7Q6ZNI0 430 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 Q6ZSR6 202 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 NLRP9Q7RTR0 991 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 DCLK2Q8N568 766 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 BTN2A2Q8WVV5 523 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 ELF4Q99607 663 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-234ENST00000557703 GORASP1Q9BQQ3 440 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 ZSCAN5AQ9BUG6 496 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 FAM83DQ9H4H8 585 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 ETNK1Q9HBU6 452 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 RIMKLBQ9ULI2 386 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 PKP3Q9Y446 797 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 ZNF711Q9Y462 761 aa13.67□□□□□ -0.22
SHMT2-234ENST00000557703 ATXN2Q99700 1313 aaKnown RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 A0A1B0GVT2 93 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 POM121BA6NF01 834 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 CACNB4O00305 520 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PCDHGA12O60330 932 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 AGTP01019 485 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PRKCGP05129 697 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 TPSB2P20231 275 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 LPOP22079 712 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 KCNJ1P48048 391 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 LMAN1P49257 510 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 KIAA1024LP59773 190 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 CKAP4Q07065 602 aaKnown RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 DHX34Q14147 1143 aaKnown RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 IRF4Q15306 451 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 TPSAB1Q15661 275 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 KIF19Q2TAC6 998 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 ADAMTSL4Q6UY14 1074 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 MACC1Q6ZN28 852 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 Q6ZVL8 140 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 ZNF572Q7Z3I7 529 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 KDELC2Q7Z4H8 507 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 GLT6D1Q7Z4J2 308 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 HSD11B1LQ7Z5J1 315 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PTAR1Q7Z6K3 402 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PCGF5Q86SE9 256 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 TSPAN33Q86UF1 283 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 ALYREFQ86V81 257 aaKnown RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PARGQ86W56 976 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PDCD7Q8N8D1 485 aaKnown RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 KLK6Q92876 244 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 AP2M1Q96CW1 435 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 APOOQ9BUR5 198 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 EDEM2Q9BV94 578 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 FICDQ9BVA6 458 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 TEX101Q9BY14 249 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 WDR26Q9H7D7 661 aa13.66□□□□□ -0.22
SHMT2-234ENST00000557703 PHPT1Q9NRX4 125 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-234ENST00000557703 LAMA1P25391 3075 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 LRRK1Q38SD2 2015 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 PATE3B3GLJ2 98 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 GPR89AB7ZAQ6 455 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 H3BM21 787 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 RAD51BO15315 384 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 KRT14P02533 472 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 WNT1P04628 370 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 APRTP07741 180 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 GPR89BP0CG08 455 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 GM2AP17900 193 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 IGFALSP35858 605 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 ETV3P41162 512 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 CCT8P50990 548 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 HNRNPKP61978 463 aaKnown RBP eCLIP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 INPP5AQ14642 412 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 SF3A2Q15428 464 aaKnown RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 HLA-BQ31612 363 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 INAVAQ3KP66 663 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 HENMT1Q5T8I9 393 aaKnown RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 DENND5AQ6IQ26 1287 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 DBX2Q6ZNG2 339 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 LYSMD3Q7Z3D4 306 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 MAATS1Q7Z4T9 603 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 MCUQ8NE86 351 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 OR13H1Q8NG92 308 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 KIF18AQ8NI77 898 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 PTCD2Q8WV60 388 aaKnown RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 C16orf45Q96MC5 204 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 FRMD8Q9BZ67 464 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 GAREM1Q9H706 876 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.65□□□□□ -0.22
SHMT2-234ENST00000557703 IL17CQ9P0M4 197 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 CDC23Q9UJX2 597 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 APPL1Q9UKG1 709 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 NEU2Q9Y3R4 380 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 PCDH15Q96QU1 1955 aa13.65□□□□□ -0.22
SHMT2-234ENST00000557703 CNOT1A5YKK6 2376 aaKnown RBP13.64□□□□□ -0.23
SHMT2-234ENST00000557703 PLXNA2O75051 1894 aa13.64□□□□□ -0.23
SHMT2-234ENST00000557703 A0A1B0GTQ1 180 aa13.64□□□□□ -0.23
SHMT2-234ENST00000557703 NEMP2A6NFY4 417 aa13.64□□□□□ -0.23
SHMT2-234ENST00000557703 A8MX80 341 aa13.64□□□□□ -0.23
SHMT2-234ENST00000557703 CDX4O14627 284 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-234ENST00000557703 STX7O15400 261 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms