RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RXRGP48443 463 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 IL9RQ01113 521 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 FZD2Q14332 565 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 NFATC4Q14934 902 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 SLC1A5Q15758 541 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 SIRPB2Q5JXA9 342 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 TPRG1LQ5T0D9 272 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 PNCKQ6P2M8 343 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 ZNF765Q7L2R6 523 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 LYSMD3Q7Z3D4 306 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 NRSN1Q8IZ57 195 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 CCDC89Q8N998 374 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 SPDYE1Q8NFV5 336 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-228ENST00000557302 COG1Q8WTW3 980 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 AP2M1Q96CW1 435 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 MS4A14Q96JA4 679 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 WDR24Q96S15 920 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 APOOQ9BUR5 198 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 GPR63Q9BZJ6 419 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 WDR26Q9H7D7 661 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 ZFYVE1Q9HBF4 777 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 DNAJC28Q9NX36 388 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 PKD2L2Q9NZM6 624 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 CD84Q9UIB8 345 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 SHOC2Q9UQ13 582 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 DRG1Q9Y295 367 aaKnown RBP13.57□□□□□ -0.24
SHMT2-228ENST00000557302 OR1A2Q9Y585 309 aa13.57□□□□□ -0.24
SHMT2-228ENST00000557302 LRRK1Q38SD2 2015 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 CNOT1A5YKK6 2376 aaKnown RBP13.56□□□□□ -0.24
SHMT2-228ENST00000557302 RGSL1A5PLK6 1076 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 K7ESM1 405 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 CACNB4O00305 520 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-228ENST00000557302 METTL18O95568 372 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 AGTP01019 485 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 TCP1P17987 556 aaKnown RBP13.56□□□□□ -0.24
SHMT2-228ENST00000557302 ADRA1AP35348 466 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 DPTQ07507 201 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 SHBQ15464 509 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 INAVAQ3KP66 663 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 FAXCQ5TGI0 409 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 RAET1GQ6H3X3 334 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 RANBP10Q6VN20 620 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 MACC1Q6ZN28 852 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 RFLNAQ6ZTI6 216 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 GSTA5Q7RTV2 222 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 KLHDC8BQ8IXV7 354 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 PRELID2Q8N945 189 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 ATL2Q8NHH9 583 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 ACTRT1Q8TDG2 376 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 NAPGQ99747 312 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-228ENST00000557302 TBL1YQ9BQ87 522 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 ABCG8Q9H221 673 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 TRABDQ9H4I3 376 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 RAD18Q9NS91 495 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 HACD3Q9P035 362 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 SPO11Q9Y5K1 396 aa13.56□□□□□ -0.24
SHMT2-228ENST00000557302 DCDC2BA2VCK2 349 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 CTAGE9A4FU28 777 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 H3BM21 787 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 FLRT2O43155 660 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PSMD3O43242 534 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SH3BP5O60239 455 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PYGLP06737 847 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 HOXC4P09017 264 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 ETS1P14921 441 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 NME1P15531 152 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 CSRP1P21291 193 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 KELP23276 732 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 TEAD1P28347 426 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 TRIM23P36406 574 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 FDFT1P37268 417 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 GPR1P46091 355 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SPINT3P49223 89 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 KIAA1024LP59773 190 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 EIF2B5Q13144 721 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SPARCL1Q14515 664 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 ZNF542PQ5EBM4 170 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 TMC3Q7Z5M5 1100 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PIP4P1Q86T03 277 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 NLRP8Q86W28 1048 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 GATAD2AQ86YP4 633 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 NAXDQ8IW45 347 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PELI3Q8N2H9 469 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 C17orf53Q8N3J3 647 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 TAB3Q8N5C8 712 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 BLOC1S5Q8TDH9 187 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SAP25Q8TEE9 199 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SETD7Q8WTS6 366 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SCAMP4Q969E2 229 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 FUBP1Q96AE4 644 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 WDR92Q96MX6 357 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 RIOK2Q9BVS4 552 aaKnown RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 AP1M1Q9BXS5 423 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 FAM83DQ9H4H8 585 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SLC32A1Q9H598 525 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 LRRC40Q9H9A6 602 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PHPT1Q9NRX4 125 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-228ENST00000557302 SMARCAL1Q9NZC9 954 aa13.55□□□□□ -0.24
SHMT2-228ENST00000557302 PAK5Q9P286 719 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms