RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ALG10BQ5I7T1 473 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 C6orf163Q5TEZ5 329 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 TMEM198Q66K66 360 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 KRT39Q6A163 491 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 OGFOD2Q6N063 350 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 FBXO46Q6PJ61 603 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-208ENST00000553278 RHOUQ7L0Q8 258 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 UBE2Q1Q7Z7E8 422 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 SERPINA11Q86U17 422 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 RASAL3Q86YV0 1011 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 WDR63Q8IWG1 891 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 LRRC56Q8IYG6 542 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-208ENST00000553278 ZBTB2Q8N680 514 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 ARL14EPQ8N8R7 260 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-208ENST00000553278 MCPH1Q8NEM0 835 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 BEST2Q8NFU1 509 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 OR10S1Q8NGN2 331 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 CFAP61Q8NHU2 1237 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 TRPC4APQ8TEL6 797 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 EXTL1Q92935 676 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 IGSF8Q969P0 613 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 VCPIP1Q96JH7 1222 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 SLC41A2Q96JW4 573 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 TEPSINQ96N21 525 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 FAM110AQ9BQ89 295 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 PI4K2AQ9BTU6 479 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 TM2D2Q9BX73 214 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 CDT1Q9H211 546 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 GOLPH3LQ9H4A5 285 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 CHCHD3Q9NX63 227 aaKnown RBP5.86□□□□□ -1.47
SCFD1-208ENST00000553278 CACNG4Q9UBN1 327 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 LIPGQ9Y5X9 500 aa5.86□□□□□ -1.47
SCFD1-208ENST00000553278 IGSF1Q8N6C5 1336 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 HTR3EA5X5Y0 456 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ANXA2P2A6NMY6 339 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 INO80B-WBP1J3KQ70 363 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 INPPL1O15357 1258 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SPRY1O43609 319 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 KLK8O60259 260 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 KERAO60938 352 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 JTBO76095 146 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SIX3O95343 332 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 PLAUP00749 431 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 CHRM5P08912 532 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SUPT20HL2P0C7V6 817 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 TFPIP10646 304 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 VPREB1P12018 145 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 RFC1P35251 1148 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 AVPR1BP47901 424 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 KRT33BQ14525 404 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 PTPAQ15257 358 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 MEP1BQ16820 701 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SUPT20HL1Q3ZLR7 823 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 USP39Q53GS9 565 aaKnown RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ESCO2Q56NI9 601 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SGO1Q5FBB7 561 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ZRANB3Q5FWF4 1079 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 GLRA4Q5JXX5 417 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 PRAMEF19Q5SWL8 479 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ISM2Q6H9L7 571 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 PPP1R21Q6ZMI0 780 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 LINGO2Q7L985 606 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 MFN1Q8IWA4 741 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SLC35F3Q8IY50 421 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ZDHHC23Q8IYP9 409 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 TRIML1Q8N9V2 468 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 CHST13Q8NET6 341 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 SNAPC3Q92966 411 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 BBC3Q96PG8 261 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 MLPHQ9BV36 600 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 XPO4Q9C0E2 1151 aaKnown RBP5.85□□□□□ -1.47
SCFD1-208ENST00000553278 DNAJB4Q9UDY4 337 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 ST6GALNAC2Q9UJ37 374 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 HACL1Q9UJ83 578 aa5.85□□□□□ -1.47
SCFD1-208ENST00000553278 LRRD1A4D1F6 860 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 H0YIN7 160 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ATP2A1O14983 1001 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SLC22A3O75751 556 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 RSL1D1O76021 490 aaKnown RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 RNF8O76064 485 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ESRRBO95718 433 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PRLRP16471 622 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ACHEP22303 614 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 HOXA7P31268 230 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 HSPA4P34932 840 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SLC16A2P36021 539 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PRKCIP41743 596 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SLC12A2P55011 1212 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 TUBB4BP68371 445 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ACTN3Q08043 901 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PPIGQ13427 754 aaKnown RBP eCLIP5.84□□□□□ -1.477e-13■□□□□ 9.8
SCFD1-208ENST00000553278 CERKLQ49MI3 558 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 TMEM211Q6ICI0 200 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 LINC00696Q6ZRV3 163 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 HAUS6Q7Z4H7 955 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SPATA19Q7Z5L4 167 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 CENPVQ7Z7K6 275 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 DENND6AQ8IWF6 608 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PARP16Q8N5Y8 322 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 RBM15BQ8NDT2 890 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms