RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMEM121Q9BTD3 319 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SLC4A5Q9BY07 1137 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SHCBP1LQ9BZQ2 653 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ARMC7Q9H6L4 198 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 LRRC4Q9HBW1 653 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 FBRSL1Q9HCM7 1045 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 XAB2Q9HCS7 855 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 KLHL11Q9NVR0 708 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 THG1LQ9NWX6 298 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 DUS2Q9NX74 493 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GIN1Q9NXP7 522 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CFAP97Q9P2B7 532 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 BCAP29Q9UHQ4 241 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 RIMS3Q9UJD0 308 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 MYRFQ9Y2G1 1151 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SIT1Q9Y3P8 196 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ZFHX2Q9C0A1 2572 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 A0A1B0GTW7 788 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 FAM170BA6NMN3 283 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 TRIM49D1C9J1S8 452 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF701M0R085 212 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 MCF2LO15068 1137 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GREM1O60565 184 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 KRT37O76014 449 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 KRT1P04264 644 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 IRF1P10914 325 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 L1CAMP32004 1257 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CLCN5P51795 746 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 KPNA1P52294 538 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SNX16P57768 344 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 RPS3AP61247 264 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 PRKCQQ04759 706 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 RUNX3Q13761 415 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 EML3Q32P44 896 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 FAM102AQ5T9C2 384 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ANKRD22Q5VYY1 191 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 FAM183BPQ6ZVS7 135 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 MIB1Q86YT6 1006 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CLVS1Q8IUQ0 354 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CHERPQ8IWX8 916 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ADGRG2Q8IZP9 1017 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF687Q8N1G0 1237 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 EMC1Q8N766 993 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 NAT8LQ8N9F0 302 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 PJA1Q8NG27 643 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 JOSD2Q8TAC2 188 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 PPP1R14CQ8TAE6 165 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 KCTD13Q8WZ19 329 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 CPT1BQ92523 772 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 HSPH1Q92598 858 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 NKD2Q969F2 451 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 ISOC1Q96CN7 298 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 SERPINI1Q99574 410 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 DCUN1D5Q9BTE7 237 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 TPK1Q9H3S4 243 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 COPS7BQ9H9Q2 264 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 PALMDQ9NP74 551 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 LTB4R2Q9NPC1 389 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 THAP1Q9NVV9 213 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 IP6K2Q9UHH9 426 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 GNPTGQ9UJJ9 305 aa7.69□□□□□ -1.18
LIMA1-216ENST00000552909 NDRG2Q9UN36 371 aaKnown RBP7.69□□□□□ -1.18
LIMA1-216ENST00000552909 TCRBV9S1A1TA0A576 114 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 H3BNH8 94 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 PSMD12O00232 456 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 GRAP2O75791 330 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 BMP10O95393 424 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 C8BP07358 591 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 SNRPAP09012 282 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 TCF3P15923 654 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 PFKLP17858 780 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 CTHP32929 405 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 ATP5C1P36542 298 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 MRPS22P82650 360 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 OGDHQ02218 1023 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 KCNC4Q03721 635 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 FLOT2Q14254 428 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 TAF5Q15542 800 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 C10orf120Q5SQS8 335 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 LGSNQ5TDP6 509 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 BSPRYQ5W0U4 402 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 OGFOD2Q6N063 350 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 ZNF852Q6ZMS4 543 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 FRMD7Q6ZUT3 714 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 ARCQ7LC44 396 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 SLC26A11Q86WA9 606 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 PIWIL2Q8TC59 973 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 FAM3CQ92520 227 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 EDEM1Q92611 657 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 C12orf43Q96C57 262 aaKnown RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 RMND5BQ96G75 393 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 SHDQ96IW2 340 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 KLF16Q9BXK1 252 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-216ENST00000552909 C20orf27Q9GZN8 174 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 FAM96AQ9H5X1 160 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 CAAP1Q9H8G2 361 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 ATAD3AQ9NVI7 634 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 GID8Q9NWU2 228 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 EBF1Q9UH73 591 aa7.68□□□□□ -1.18
LIMA1-216ENST00000552909 XPO7Q9UIA9 1087 aaKnown RBP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms