RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 UPF3AQ9H1J1 476 aaKnown RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 EBF3Q9H4W6 596 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 FAM124BQ9H5Z6 455 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 LATS2Q9NRM7 1088 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 POLR3BQ9NW08 1133 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-215ENST00000552823 LNPEPQ9UIQ6 1025 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 ADAMTS6Q9UKP5 1117 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 IKZF3Q9UKT9 509 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 TRAF6Q9Y4K3 522 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SCN10AQ9Y5Y9 1956 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 SIP14410 1827 aa5.59□□□□□ -1.51
LIMA1-215ENST00000552823 CASP8AP2Q9UKL3 1982 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF840PA6NDX5 716 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MATN2O00339 956 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF195O14628 629 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 GIPC1O14908 333 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 LDB2O43679 373 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 SNX2O60749 519 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 SMIM24O75264 130 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 STC2O76061 302 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 TOMM70O94826 608 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 IPO13O94829 963 aaKnown RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 TMCC1O94876 653 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 RTN3O95197 1032 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 PEX11BO96011 259 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 IGLV3-25P01717 112 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 GNAZP19086 355 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ADRA1AP35348 466 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 PSEN1P49768 467 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 PPP1R8Q12972 351 aaKnown RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 GRB7Q14451 532 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CYTH1Q15438 398 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 INSCQ1MX18 579 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 SFT2D3Q587I9 215 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CAPRIN2Q6IMN6 1127 aaKnown RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MRNIPQ6NTE8 343 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MSANTD2Q6P1R3 559 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 TRAF7Q6Q0C0 670 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MBOAT1Q6ZNC8 495 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 EP400NLQ6ZTU2 488 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ANKS3Q6ZW76 656 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 PIWIL4Q7Z3Z4 852 aaKnown RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MFN1Q8IWA4 741 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CMTM8Q8IZV2 173 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 KDM1BQ8NB78 822 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 C2CD4AQ8NCU7 369 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CLHC1Q8NHS4 586 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 FAM110BQ8TC76 370 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 C8orf48Q96LL4 319 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 MRPL57Q9BQC6 102 aaKnown RBP5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CLSTN3Q9BQT9 956 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 BEGAINQ9BUH8 593 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 BOCQ9BWV1 1114 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 DRC3Q9H069 523 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 IGSF5Q9NSI5 407 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 HCFC1R1Q9NWW0 138 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 CFAP97Q9P2B7 532 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 THEGQ9P2T0 379 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 APPL1Q9UKG1 709 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ANGPTL2Q9UKU9 493 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 SLC30A1Q9Y6M5 507 aa5.59□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF839A8K0R7 811 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 UBFD1O14562 309 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PIP5K1BO14986 540 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PER2O15055 1255 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 RFPL2O75678 378 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PGM3O95394 542 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CNPP09543 421 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ATXN1LP0C7T5 689 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 NCK1P16333 377 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 EFNA1P20827 205 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CRABP2P29373 138 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CTSOP43234 321 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 APLP1P51693 650 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 DIO3P55073 304 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 AQP4P55087 323 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 NTHL1P78549 312 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 SULT2A1Q06520 285 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TRAF2Q12933 501 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CEACAM7Q14002 265 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PTK2BQ14289 1009 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 VEPH1Q14D04 833 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF648Q5T619 568 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 MANEALQ5VSG8 457 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PTRHD1Q6GMV3 140 aaKnown RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 KIAA0930Q6ICG6 404 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 UGT3A1Q6NUS8 523 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 BNC2Q6ZN30 1099 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 FAM43BQ6ZT52 329 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 LYSMD3Q7Z3D4 306 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 UMODL1-AS1Q8N2C9 162 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ARHGAP18Q8N392 663 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 FBXO39Q8N4B4 442 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CALML6Q8TD86 181 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 EEF1AKMT1Q8WVE0 214 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 ASIC4Q96FT7 647 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 CNBD2Q96M20 576 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 LRGUKQ96M69 825 aa5.58□□□□□ -1.52
LIMA1-215ENST00000552823 PRICKLE1Q96MT3 831 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-215ENST00000552823 TRIM62Q9BVG3 475 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms