RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LINC00346Q8IVM7 164 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 SCML4Q8N228 414 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 ARFGAP1Q8N6T3 406 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 TEX45Q8NA69 505 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 HJURPQ8NCD3 748 aaPredicted RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 C16orf52Q8NHV5 167 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 GABPB2Q8TAK5 448 aaPredicted RBP4.21□□□□□ -1.74
VPS29-205ENST00000548539 BICD2Q8TD16 824 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 LPAR1Q92633 364 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 IGSF8Q969P0 613 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 SLC25A28Q96A46 364 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 OTULINQ96BN8 352 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 PGAM5Q96HS1 289 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 VCPIP1Q96JH7 1222 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 SLC41A2Q96JW4 573 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 PPP1R13BQ96KQ4 1090 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 SLITRK1Q96PX8 696 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 FAM110AQ9BQ89 295 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 FZD3Q9NPG1 666 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 TMEM51Q9NW97 253 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 OGFRQ9NZT2 677 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 NFE2L3Q9Y4A8 694 aa4.21□□□□□ -1.74
VPS29-205ENST00000548539 FAM90A10PA6NDY2 464 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 GAGE12JA6NER3 117 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 AKR1B15C9JRZ8 316 aaPredicted RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 HCRTR2O43614 444 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 SYF2O95926 243 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 FGBP02675 491 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 G6PDP11413 515 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 MYF6P23409 242 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 EIF2S3P41091 472 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 SLC15A1P46059 708 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 NRIP1P48552 1158 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 HYAL1Q12794 435 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 TRAF1Q13077 416 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 AIMP2Q13155 320 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 SHBQ15464 509 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 EIF2S3LQ2VIR3 472 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 PRTGQ2VWP7 1150 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 USP41Q3LFD5 358 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 JADE1Q6IE81 842 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 ANKRD54Q6NXT1 300 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 Q6ZSV7 163 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 MON1BQ7L1V2 547 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 LINGO2Q7L985 606 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 ZNF367Q7RTV3 350 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 NRACQ8N912 160 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 POC5Q8NA72 575 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 SCCPDHQ8NBX0 429 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 C7orf57Q8NEG2 295 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 SNRNP27Q8WVK2 155 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 RRNAD1Q96FB5 475 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 GAD1Q99259 594 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 FOXP1Q9H334 677 aaPredicted RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 NDST4Q9H3R1 872 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 CLK4Q9HAZ1 481 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 KRCC1Q9NPI7 259 aaPredicted RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 RCOR1Q9UKL0 485 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 ERVK-11Q9UQG0 969 aa4.2□□□□□ -1.74
VPS29-205ENST00000548539 PTRH2Q9Y3E5 179 aaKnown RBP4.2□□□□□ -1.74
VPS29-205ENST00000548539 IGLV5-39A0A0G2JS06 123 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 BECN2A8MW95 431 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 J3KR12 359 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 SCAMP1O15126 338 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 ADAM20O43506 726 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 ITM2AO43736 263 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 PLOD3O60568 738 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 FTCDO95954 541 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 CYP1A2P05177 515 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 ADRB2P07550 413 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 SRPRAP08240 638 aaKnown RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 SELLP14151 372 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 TMEM11P17152 192 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 SAT1P21673 171 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 ME1P48163 572 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 RFX5P48382 616 aaPredicted RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 ACSM2AQ08AH3 577 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 DCAF6Q58WW2 860 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 TMEM198Q66K66 360 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 ACSM2BQ68CK6 577 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 PQLC2Q6ZP29 291 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 CFAP77Q6ZQR2 320 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MTSS1LQ765P7 747 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 PATL1Q86TB9 770 aaKnown RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 WDR63Q8IWG1 891 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MMP21Q8N119 569 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 SGCDQ92629 289 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 NLRP4Q96MN2 994 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 OR2A14Q96R47 310 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 PCGF1Q9BSM1 259 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MKKSQ9NPJ1 570 aaPredicted RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 HINT3Q9NQE9 182 aaKnown RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 ZBTB40Q9NUA8 1239 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 OR6C3Q9NZP0 311 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MRPL15Q9P015 296 aaKnown RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 SRPRBQ9Y5M8 271 aaKnown RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 RAI2Q9Y5P3 530 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MAGED1Q9Y5V3 778 aaPredicted RBP4.19□□□□□ -1.74
VPS29-205ENST00000548539 STON1Q9Y6Q2 735 aa4.19□□□□□ -1.74
VPS29-205ENST00000548539 MS4A18H0YCH9 400 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms