RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RPS18P62269 152 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 DNASE1L3Q13609 305 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TAF5Q15542 800 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CHRNA6Q15825 494 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 KYNUQ16719 465 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ALFQ53S48 1182 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ATXN7L2Q5T6C5 722 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 KRT39Q6A163 491 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 RETSATQ6NUM9 610 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 MRPL14Q6P1L8 145 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FAM173BQ6P4H8 233 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FAM199XQ6PEV8 388 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 LCLAT1Q6UWP7 414 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 GDPD4Q6W3E5 623 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 UNC13DQ70J99 1090 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 APLFQ8IW19 511 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 RHOT1Q8IXI2 618 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FAM186BQ8IYM0 893 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 PCDH20Q8N6Y1 951 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 PAF1Q8N7H5 531 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 BMPERQ8N8U9 685 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 NETO2Q8NC67 525 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SLC35F5Q8WV83 523 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TFAP2BQ92481 460 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 MRFAP1L1Q96HT8 127 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SLC38A3Q99624 504 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ILKAPQ9H0C8 392 aaPredicted RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ING2Q9H160 280 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TNMDQ9H2S6 317 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ACTL8Q9H568 366 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CARS2Q9HA77 564 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 LIN7BQ9HAP6 207 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TMEM8AQ9HCN3 771 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FGF22Q9HCT0 170 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 SRA1Q9HD15 236 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 ATP13A1Q9HD20 1204 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 FBXO8Q9NRD0 319 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 DMAC2Q9NW81 257 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 RAB20Q9NX57 234 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TAAR2Q9P1P5 351 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 LNPEPQ9UIQ6 1025 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 G3BP2Q9UN86 482 aaKnown RBP4.78□□□□□ -1.64
LIMS1-214ENST00000542845 TBC1D30Q9Y2I9 924 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 PCDHB4Q9Y5E5 795 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 HS3ST4Q9Y661 456 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 CELSR1Q9NYQ6 3014 aa4.78□□□□□ -1.64
LIMS1-214ENST00000542845 NF1P21359 2839 aa4.78□□□□□ -1.65
LIMS1-214ENST00000542845 APCP25054 2843 aa4.78□□□□□ -1.65
LIMS1-214ENST00000542845 HIVEP1P15822 2718 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PCNX1Q96RV3 2341 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 A8MX80 341 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CALUO43852 315 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PRICKLE3O43900 615 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PAGE1O75459 146 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 POP4O95707 220 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DLGAP3O95886 979 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 F9P00740 461 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CD99P14209 185 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CCNB1P14635 433 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 ATF4P18848 351 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 GPR3P46089 330 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 GNPDA1P46926 289 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 SEPHS1P49903 392 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 SERPINH1P50454 418 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 KRTAP10-9P60411 292 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 YWHAEP62258 255 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 YWHAZP63104 245 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CDK17Q00537 523 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 SRSF11Q05519 484 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 ILF3Q12906 894 aaKnown RBP eCLIP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 STK4Q13043 487 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CUL4BQ13620 913 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 POLD3Q15054 466 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 TESK1Q15569 626 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CNGA2Q16280 664 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CLPPQ16740 277 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 MYLK3Q32MK0 819 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 VWA2Q5GFL6 755 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 TCERG1LQ5VWI1 586 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 TMEM270Q6UE05 265 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 LRRC31Q6UY01 552 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 SPNS3Q6ZMD2 512 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 ZNF517Q6ZMY9 492 aaPredicted RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 TAOK1Q7L7X3 1001 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 BRAPQ7Z569 592 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PHLDB2Q86SQ0 1253 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CDH24Q86UP0 819 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 ZNF354CQ86Y25 554 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 NRROSQ86YC3 692 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DRC7Q8IY82 874 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 GRAMD1CQ8IYS0 662 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DEFB106AQ8N104 65 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 GUF1Q8N442 669 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 RBMXL3Q8N7X1 1067 aaKnown RBP4.77□□□□□ -1.65
LIMS1-214ENST00000542845 DCAF4L2Q8NA75 395 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 FBXL13Q8NEE6 735 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 FDCSPQ8NFU4 85 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 OR10G6Q8NH81 332 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 CT55Q8WUE5 264 aa4.77□□□□□ -1.65
LIMS1-214ENST00000542845 PNPLA2Q96AD5 504 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms