RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NR1D2Q14995 579 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 TXNRD3NBQ6F5E7 133 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 Q6ZVL8 140 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 TRIM74Q86UV6 250 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 PDCD6IPQ8WUM4 868 aaKnown RBP15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 DTD2Q96FN9 168 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 ARHGAP9Q9BRR9 750 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 NOD2Q9HC29 1040 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 IL17BQ9UHF5 180 aa15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 HEMK1Q9Y5R4 338 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-213ENST00000541953 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 EML2O95834 649 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 CPP00450 1065 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 CTPS1P17812 591 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 KELP23276 732 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 VIPR1P32241 457 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 CSRP3P50461 194 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 CTBSQ01459 385 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 SMTNL2Q2TAL5 461 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 TMCO4Q5TGY1 634 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 DOK6Q6PKX4 331 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 PIM3Q86V86 326 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 PAF1Q8N7H5 531 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 SPOCK2Q92563 424 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 AGAP2Q99490 1192 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 SLC12A9Q9BXP2 914 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 SEPT3Q9UH03 358 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 CD84Q9UIB8 345 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 B3GALT1Q9Y5Z6 326 aa15.44■□□□□ 0.06
CLSTN3-213ENST00000541953 GOLGA6CA6NDK9 693 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 GOLGA6BA6NDN3 693 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 DAPK3O43293 454 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 GOLGA6DP0CG33 693 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 LIFP15018 202 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 FERP16591 822 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 AMPD1P23109 780 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 ADCY8P40145 1251 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 RFTN1Q14699 578 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 KIAA1524Q8TCG1 905 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 NKD1Q969G9 470 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 TMEM159Q96B96 161 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 GSDMCQ9BYG8 508 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 PHPT1Q9NRX4 125 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 PARVAQ9NVD7 372 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 OCIAD1Q9NX40 245 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 GOLGA6AQ9NYA3 693 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 SEPT10Q9P0V9 454 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 SLC17A4Q9Y2C5 497 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 TMEM98Q9Y2Y6 226 aa15.43■□□□□ 0.06
CLSTN3-213ENST00000541953 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 IGHV1OR21-1A0A087WYE8 117 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 LRRC10BA6NIK2 292 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 LRRC53A6NM62 1247 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 RHPN2P1A8MT19 583 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 MAFKO60675 156 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 TPM2P07951 284 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 PDHA1P08559 390 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 THRAP10827 490 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 LIMK2P53671 638 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 POLR2LP62875 67 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 MYL5Q02045 173 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 ILF3Q12906 894 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 ZNF235Q14590 738 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 RAET1GQ6H3X3 334 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 ZNF571Q7Z3V5 609 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 TECPR1Q7Z6L1 1165 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 PTRH1Q86Y79 214 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 ART4Q93070 314 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 SCAMP4Q969E2 229 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 RNF31Q96EP0 1072 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 MCCC1Q96RQ3 725 aaPredicted RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 NUDCD1Q96RS6 583 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 MGME1Q9BQP7 344 aa15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 TRNAU1APQ9NX07 287 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 UTP20O75691 2785 aaKnown RBP15.42■□□□□ 0.06
CLSTN3-213ENST00000541953 TRBV23OR9-2A0A075B6M9 112 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 STMND1H3BQB6 276 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 DDX3XO00571 662 aaKnown RBP eCLIP15.41■□□□□ 0.065e-7■□□□□ 10.5
CLSTN3-213ENST00000541953 PRPSAP2O60256 369 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 SOCS5O75159 536 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 PGLSO95336 258 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 UGT1A3P35503 534 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 ACTR1BP42025 376 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 ACTR1AP61163 376 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 TSR1Q2NL82 804 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 FAM182AQ5T1J6 154 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 ATG14Q6ZNE5 492 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 MARK2Q7KZI7 788 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 POLNQ7Z5Q5 900 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 BMPERQ8N8U9 685 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 PIH1D2Q8WWB5 315 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 ZNF599Q96NL3 588 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 CSPG4P5Q96PW8 444 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 SEMA3CQ99985 751 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 ABCG8Q9H221 673 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 HAUS4Q9H6D7 363 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 CNOT8Q9UFF9 292 aaKnown RBP15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 PCDHB11Q9Y5F2 797 aa15.41■□□□□ 0.06
CLSTN3-213ENST00000541953 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.4■□□□□ 0.06
CLSTN3-213ENST00000541953 EIF3CLB5ME19 914 aaKnown RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms