RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 TMC3Q7Z5M5 1100 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 RASSF3Q86WH2 238 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 UNC5BQ8IZJ1 945 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 NDUFAF2Q8N183 169 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 CBARPQ8N350 705 aaPredicted RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 PPHLN1Q8NEY8 458 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 OR4K2Q8NGD2 314 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 OR14C36Q8NHC7 312 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 PYROXD1Q8WU10 500 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 RLN3Q8WXF3 142 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 MFSD3Q96ES6 412 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 DNAJC1Q96KC8 554 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 COL25A1Q9BXS0 654 aaPredicted RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 GPR63Q9BZJ6 419 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 CDC42EP4Q9H3Q1 356 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 SEMA4AQ9H3S1 761 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 ZFYVE1Q9HBF4 777 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 NINJ2Q9NZG7 142 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 IL17CQ9P0M4 197 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 USP36Q9P275 1121 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 ZC3H7BQ9UGR2 993 aaKnown RBP9.34□□□□□ -0.91
DDX55-208ENST00000541259 SCML1Q9UN30 329 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 SOX13Q9UN79 622 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 INVSQ9Y283 1065 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 COQ6Q9Y2Z9 468 aa9.34□□□□□ -0.91
DDX55-208ENST00000541259 FAM237BA0A1B0GVD1 139 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 MAGEB16A2A368 324 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 HEATR9A2RTY3 570 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PRR23AA6NEV1 266 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TNFRSF10AO00220 468 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 NEMP1O14524 444 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PLRG1O43660 514 aaKnown RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 AP1G1O43747 822 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PCDH8O95206 1070 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PAPSS2O95340 614 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 CRTAMO95727 393 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TUBBP07437 444 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PGAM1P18669 254 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 LPOP22079 712 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 SSTR1P30872 391 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 CCR3P51677 355 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ARSDP51689 593 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ZNF140P52738 457 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 STC1P52823 247 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PMS2P54278 862 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ADPRHP54922 357 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ELP6Q0PNE2 266 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ARHGEF7Q14155 803 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 UAP1Q16222 522 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 TTC31Q49AM3 519 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 ANKRD20A4Q4UJ75 823 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 SEL1L3Q68CR1 1132 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 UNC5AQ6ZN44 842 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TMEM135Q86UB9 458 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 KBTBD6Q86V97 674 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 RELL1Q8IUW5 271 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PALM2Q8IXS6 379 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 MAML2Q8IZL2 1156 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 FBXL6Q8N531 539 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 CAMKK1Q8N5S9 505 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PNPLA1Q8N8W4 532 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 OR13J1Q8NGT2 312 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 UHMK1Q8TAS1 419 aaKnown RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.33□□□□□ -0.92
DDX55-208ENST00000541259 KLK6Q92876 244 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 RAB7BQ96AH8 199 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ZNF669Q96BR6 464 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 LRRC39Q96DD0 335 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 IER2Q9BTL4 223 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 PHACTR1Q9C0D0 580 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TSPYL1Q9H0U9 437 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 EPB41L4BQ9H329 900 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TRABDQ9H4I3 376 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 SUDS3Q9H7L9 328 aaPredicted RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 MRM3Q9HC36 420 aaKnown RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 LRRC4CQ9HCJ2 640 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 C11orf16Q9NQ32 467 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TREX1Q9NSU2 369 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 IL1RAPL1Q9NZN1 696 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 HACD3Q9P035 362 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 SAMD15Q9P1V8 674 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 CD84Q9UIB8 345 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 FKBPLQ9UIM3 349 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 FZD4Q9ULV1 537 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 ZFR2Q9UPR6 939 aaKnown RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 NCKAP1Q9Y2A7 1128 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 FNDC3AQ9Y2H6 1198 aaKnown RBP9.33□□□□□ -0.92
DDX55-208ENST00000541259 RPS6KL1Q9Y6S9 549 aa9.33□□□□□ -0.92
DDX55-208ENST00000541259 TP53BP1Q12888 1972 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3DA0A087WVF3 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3IA0A087WXS9 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3EA0A087X179 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3KA0A087X1G2 549 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 IGHV1OR15-9A0A0B4J2B8 117 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 ZCWPW2A0A1B0GU75 182 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 TBC1D3FA6NER0 549 aaPredicted RBP9.32□□□□□ -0.92
DDX55-208ENST00000541259 IGLON5A6NGN9 336 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 OR51F1A6NGY5 319 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 FAM47DPA6NHR8 397 aa9.32□□□□□ -0.92
DDX55-208ENST00000541259 C2orf81A6NN90 581 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms