RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TPP1O14773 563 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 TNFRSF10CO14798 259 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 AQP9O43315 295 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 SIGLEC6O43699 453 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 NRDCO43847 1150 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 RASGRP1O95267 797 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 LDOC1O95751 146 aaPredicted RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 NDST3O95803 873 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 MT-CYBP00156 380 aaPredicted RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 SOD1P00441 154 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 EPOP01588 193 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 PYGLP06737 847 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 ALPPL2P10696 532 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 CDK4P11802 303 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 NFKB1P19838 968 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 KELP23276 732 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 ACP1P24666 158 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 HK3P52790 923 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 CDK18Q07002 472 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 ILKQ13418 452 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 KDELC1Q6UW63 502 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 RBFAQ8N0V3 343 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 SDR16C5Q8N3Y7 309 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 TTC13Q8NBP0 860 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 SPATA22Q8NHS9 363 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 SRPK1Q96SB4 655 aaKnown RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 MLPHQ9BV36 600 aaPredicted RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 SLC13A1Q9BZW2 595 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 GBA3Q9H227 469 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 TCEAL2Q9H3H9 227 aaPredicted RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 USP29Q9HBJ7 922 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 KLHL8Q9P2G9 620 aaPredicted RBP13.09□□□□□ -0.31
LTBR-208ENST00000541005 KLQ9UEF7 1012 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 FAM153AQ9UHL3 310 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 NEUROG3Q9Y4Z2 214 aa13.09□□□□□ -0.31
LTBR-208ENST00000541005 SPEGQ15772 3267 aa13.08□□□□□ -0.31
LTBR-208ENST00000541005 PIKFYVEQ9Y2I7 2098 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 C1orf232A0A0U1RR37 186 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 LOC285095A0A1B0GVY8 99 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 RGSL1A5PLK6 1076 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 LMO7DNF2Z398 122 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 H7C0C1 242 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 PDE2AO00408 941 aaPredicted RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 FFAR2O15552 330 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 RBP3P10745 1247 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 CKMT2P17540 419 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 RBL1P28749 1068 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 ATP5OP48047 213 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 EIF3EP60228 445 aaKnown RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 SRP54P61011 504 aaKnown RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 CDK3Q00526 305 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 GALNT3Q14435 633 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 HS1BP3Q53T59 392 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 FAM182AQ5T1J6 154 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 DENND2CQ68D51 928 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 ZCCHC8Q6NZY4 707 aaKnown RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 ADAMTSL4Q6UY14 1074 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 HEATR4Q86WZ0 1026 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 FSTL5Q8N475 847 aaPredicted RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 OR56A4Q8NGH8 313 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 PDXPQ96GD0 296 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 FERMT1Q9BQL6 677 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 SCNM1Q9BWG6 230 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 LGR4Q9BXB1 951 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 ABCG8Q9H221 673 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 MAGEE1Q9HCI5 957 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 FGF22Q9HCT0 170 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 PHPT1Q9NRX4 125 aaPredicted RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 NFKBIL1Q9UBC1 381 aaPredicted RBP13.08□□□□□ -0.32
LTBR-208ENST00000541005 AKAP13Q12802 2813 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 APC2O95996 2303 aa13.08□□□□□ -0.32
LTBR-208ENST00000541005 KIF26BQ2KJY2 2108 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 USP24Q9UPU5 2620 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 LY6G6EA0A0G2JKS1 128 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 A0A0U1RQS6 177 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 GOLGA6L9A6NEM1 432 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 TMEM202A6NGA9 273 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 HYAL3O43820 417 aaPredicted RBP13.07□□□□□ -0.32
LTBR-208ENST00000541005 PMPCBO75439 489 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 GCATO75600 419 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 RFPL3O75679 317 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 CLDN7O95471 211 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 TOP3BO95985 862 aaKnown RBP13.07□□□□□ -0.32
LTBR-208ENST00000541005 CKMT1AP12532 417 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 SPINT3P49223 89 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 WNT3AP56704 352 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 DCDC1P59894 354 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 DNAJC3Q13217 504 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 MPP3Q13368 585 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 SMAD1Q15797 465 aaKnown RBP13.07□□□□□ -0.32
LTBR-208ENST00000541005 PCSK7Q16549 785 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 PRRT3Q5FWE3 981 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 HENMT1Q5T8I9 393 aaKnown RBP13.07□□□□□ -0.32
LTBR-208ENST00000541005 FAXCQ5TGI0 409 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 KCTD16Q68DU8 428 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 ITPRIPL1Q6GPH6 555 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 RAET1GQ6H3X3 334 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 LVRNQ6Q4G3 990 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 ENPP7Q6UWV6 458 aa13.07□□□□□ -0.32
LTBR-208ENST00000541005 RFLNAQ6ZTI6 216 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms