RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 EIF2B4Q9UI10 523 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-210ENST00000540931 APPL1Q9UKG1 709 aa17.51■□□□□ 0.39
CLSTN3-210ENST00000540931 ZFR2Q9UPR6 939 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-210ENST00000540931 SHOC2Q9UQ13 582 aa17.51■□□□□ 0.39
CLSTN3-210ENST00000540931 SPTBN2O15020 2390 aa17.51■□□□□ 0.39
CLSTN3-210ENST00000540931 TRPM6Q9BX84 2022 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 A6NNZ2 444 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 STX7O15400 261 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 TTI1O43156 1089 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 SYPP08247 313 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 HOXC4P09017 264 aaPredicted RBP17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 KELP23276 732 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 ADRA1DP25100 572 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 CD38P28907 300 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 PTGER3P43115 390 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 RABIFP47224 123 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 VPS41P49754 854 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 PPP2CBP62714 309 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 PPP2CAP67775 309 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 KCNJ11Q14654 390 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 FAXCQ5TGI0 409 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 SEL1L3Q68CR1 1132 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 ESRP1Q6NXG1 681 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 CEP128Q6ZU80 1094 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 CCNJLQ8IV13 435 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 OXR1Q8N573 874 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 PIGKQ92643 395 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 CENPTQ96BT3 561 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 DTD2Q96FN9 168 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 NAT9Q9BTE0 207 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 ZSCAN5AQ9BUG6 496 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 NUSAP1Q9BXS6 441 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 MIR1-1HGQ9H1L0 117 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 L2HGDHQ9H9P8 463 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 AASDHPPTQ9NRN7 309 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 WHRNQ9P202 907 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 NCDNQ9UBB6 729 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 ITM2BQ9Y287 266 aa17.5■□□□□ 0.39
CLSTN3-210ENST00000540931 CEP192Q8TEP8 1941 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 F5H423 210 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 SLC31A1O15431 190 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 CLDN7O95471 211 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 LHCGRP22888 699 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 HTR1BP28222 390 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 MAT2AP31153 395 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 SPINT3P49223 89 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 C21orf59P57076 290 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 C2orf54Q08AI8 447 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 ITGA9Q13797 1035 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 CDKN3Q16667 212 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 LRRC73Q5JTD7 316 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 PCID2Q5JVF3 399 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 DENND5AQ6IQ26 1287 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 SLC23A3Q6PIS1 610 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 KYAT3Q6YP21 454 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 TECPR1Q7Z6L1 1165 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 TMEM145Q8NBT3 493 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 PPHLN1Q8NEY8 458 aaKnown RBP17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 STYXQ8WUJ0 223 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 CPT1BQ92523 772 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 FOXP3Q9BZS1 431 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 TSPYL1Q9H0U9 437 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 FAM83DQ9H4H8 585 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 SAMD15Q9P1V8 674 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 SLC6A14Q9UN76 642 aa17.49■□□□□ 0.39
CLSTN3-210ENST00000540931 KHNYNO15037 678 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 VILLO15195 856 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 ITPKAP23677 461 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 MPLP40238 635 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 RSPO4Q2I0M5 234 aaPredicted RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 DNAJC21Q5F1R6 531 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 RNASEH2BQ5TBB1 312 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 IZUMO3Q5VZ72 239 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 LYSMD3Q7Z3D4 306 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 ABI3BPQ7Z7G0 1075 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 PDIK1LQ8N165 341 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 NAT8LQ8N9F0 302 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 OR52K1Q8NGK4 314 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 C1orf216Q8TAB5 229 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 GABPB2Q8TAK5 448 aaPredicted RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 AP2M1Q96CW1 435 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 LRRC39Q96DD0 335 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 KLHDC7BQ96G42 594 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 MRM3Q9HC36 420 aaKnown RBP17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 TM9SF3Q9HD45 589 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 IL17CQ9P0M4 197 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 GGT7Q9UJ14 662 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 ACACBO00763 2458 aa17.48■□□□□ 0.39
CLSTN3-210ENST00000540931 ABCA7Q8IZY2 2146 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 SDR42E2A6NKP2 422 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 A8MX80 341 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 CACNB4O00305 520 aaPredicted RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 YKT6O15498 198 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 RAD51CO43502 376 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 USP12O75317 370 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 SEC31AO94979 1220 aaKnown RBP17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 PRKCGP05129 697 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 ZNF806P0C7X5 589 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 PAMP19021 973 aa17.47■□□□□ 0.39
CLSTN3-210ENST00000540931 TRIM23P36406 574 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms