RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TMEM8BA6NDV4 472 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 ANKRD66B4E2M5 251 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 RASGRP1O95267 797 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 CELA2BP08218 269 aaPredicted RBP14.18□□□□□ -0.14
USP28-209ENST00000540925 CA4P22748 312 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 HTR1BP28222 390 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 BLKP51451 505 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 COL9A2Q14055 689 aaPredicted RBP14.18□□□□□ -0.14
USP28-209ENST00000540925 DEFB133Q30KQ1 61 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 ODF2Q5BJF6 829 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 FAXCQ5TGI0 409 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 KAZNQ674X7 775 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 ENPP7Q6UWV6 458 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 MARCH9Q86YJ5 346 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 SDR16C5Q8N3Y7 309 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 FSTL5Q8N475 847 aaPredicted RBP14.18□□□□□ -0.14
USP28-209ENST00000540925 PAF1Q8N7H5 531 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 OR56A4Q8NGH8 313 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 ATL2Q8NHH9 583 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 KIAA1524Q8TCG1 905 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 TFB1MQ8WVM0 346 aaKnown RBP14.18□□□□□ -0.14
USP28-209ENST00000540925 AGAP3Q96P47 875 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 QKIQ96PU8 341 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP28-209ENST00000540925 WDR24Q96S15 920 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 RBM15Q96T37 977 aaKnown RBP eCLIP14.18□□□□□ -0.14
USP28-209ENST00000540925 DESI2Q9BSY9 194 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 SLC13A1Q9BZW2 595 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 ABCG8Q9H221 673 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 WDR26Q9H7D7 661 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 GLOD4Q9HC38 313 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 TRIM10Q9UDY6 481 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 KLQ9UEF7 1012 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 DNPEPQ9ULA0 475 aa14.18□□□□□ -0.14
USP28-209ENST00000540925 KNTC1P50748 2209 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 APOC4-APOC2K7ER74 178 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 CACNB4O00305 520 aaPredicted RBP14.17□□□□□ -0.14
USP28-209ENST00000540925 YY2O15391 372 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 APOC2P02655 101 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 FUCA1P04066 466 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 CEACAM5P06731 702 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 GP1BAP07359 652 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 MYCLP1P12525 358 aaPredicted RBP14.17□□□□□ -0.14
USP28-209ENST00000540925 MYF5P13349 255 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 CLDN6P56747 220 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 INSM1Q01101 510 aaPredicted RBP14.17□□□□□ -0.14
USP28-209ENST00000540925 XRCC4Q13426 336 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 C1orf61Q13536 156 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 ARHGEF7Q14155 803 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 C6orf132Q5T0Z8 1188 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 CDCP2Q5VXM1 449 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 LVRNQ6Q4G3 990 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 ADAMTSL4Q6UY14 1074 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 HEATR4Q86WZ0 1026 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 HID1Q8IV36 788 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 NRSN1Q8IZ57 195 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 NDUFAF2Q8N183 169 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 LPCAT1Q8NF37 534 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 P3H4Q92791 437 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 EID2BQ96D98 161 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 FRMD8Q9BZ67 464 aaPredicted RBP14.17□□□□□ -0.14
USP28-209ENST00000540925 NCKIPSDQ9NZQ3 722 aa14.17□□□□□ -0.14
USP28-209ENST00000540925 DSPP15924 2871 aaKnown RBP14.17□□□□□ -0.14
USP28-209ENST00000540925 EME2A4GXA9 379 aaPredicted RBP14.16□□□□□ -0.14
USP28-209ENST00000540925 HACD1B0YJ81 288 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 MTSS1O43312 755 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 CLDN7O95471 211 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 MT-CYBP00156 380 aaPredicted RBP14.16□□□□□ -0.14
USP28-209ENST00000540925 KELP23276 732 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 EPHB1P54762 984 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 RWDD2BP57060 319 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 CDK3Q00526 305 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 E2F1Q01094 437 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 NOMO1Q15155 1222 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 ELOCQ15369 112 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 HS1BP3Q53T59 392 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 CCDC157Q569K6 752 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 DENND2CQ68D51 928 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 KDELC1Q6UW63 502 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 KIAA1328Q86T90 577 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 CCDC50Q8IVM0 306 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 SLC35F3Q8IY50 421 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 DCBLD1Q8N8Z6 715 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 SPATA22Q8NHS9 363 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 SCAMP4Q969E2 229 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 SCARF2Q96GP6 870 aaPredicted RBP14.16□□□□□ -0.14
USP28-209ENST00000540925 COX14Q96I36 57 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 HEMGNQ9BXL5 484 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 OSBPL8Q9BZF1 889 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 MRPL40Q9NQ50 206 aaKnown RBP14.16□□□□□ -0.14
USP28-209ENST00000540925 SEPT10Q9P0V9 454 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 DKK4Q9UBT3 224 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 SLC17A4Q9Y2C5 497 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 ADGRG1Q9Y653 693 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 ASXL3Q9C0F0 2248 aa14.16□□□□□ -0.14
USP28-209ENST00000540925 PRSS38A1L453 326 aa14.15□□□□□ -0.14
USP28-209ENST00000540925 FAM149AA5PLN7 773 aa14.15□□□□□ -0.14
USP28-209ENST00000540925 PDE2AO00408 941 aaPredicted RBP14.15□□□□□ -0.14
USP28-209ENST00000540925 DDX3YO15523 660 aaKnown RBP14.15□□□□□ -0.14
USP28-209ENST00000540925 PYGMP11217 842 aa14.15□□□□□ -0.14
USP28-209ENST00000540925 SPINT3P49223 89 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms