RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 C11orf96Q7Z7L8 435 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 TNS4Q8IZW8 715 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 TEX19Q8NA77 164 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 OR2T12Q8NG77 320 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 TBC1D15Q8TC07 691 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 SCRN2Q96FV2 425 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 MAELQ96JY0 434 aaKnown RBP8.76□□□□□ -1.01
YBX3-208ENST00000540447 HYLS1Q96M11 299 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 ZNF696Q9H7X3 374 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 CNOT11Q9UKZ1 510 aaKnown RBP8.76□□□□□ -1.01
YBX3-208ENST00000540447 MNDAP41218 407 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 MVKQ03426 396 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 SLC3A1Q07837 685 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 BTN1A1Q13410 526 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 BRMS1LQ5PSV4 323 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 SCML4Q8N228 414 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 ACE2Q9BYF1 805 aaPredicted RBP8.76□□□□□ -1.01
YBX3-208ENST00000540447 SLC7A5P2Q9GIP4 190 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 CATSPERBQ9H7T0 1116 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 LRRC4CQ9HCJ2 640 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 RAB23Q9ULC3 237 aa8.76□□□□□ -1.01
YBX3-208ENST00000540447 NCANO14594 1321 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 PPEF2O14830 753 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 FMO4P31512 558 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NOMO3P69849 1222 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SMARCB1Q12824 385 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 PRKG2Q13237 762 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NOMO1Q15155 1222 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 OVOS1Q6IE37 1185 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CXorf57Q6NSI4 855 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 C3orf67Q6ZVT6 689 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 OR10T2Q8NGX3 314 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SPOCK3Q9BQ16 436 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ANKMY1Q9P2S6 941 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 MAN2B2Q9Y2E5 1009 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CTTNBP2Q8WZ74 1663 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 INMT-MINDY4F8WBC2 141 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CYP1A1P04798 512 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 NAT2P11245 290 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ANXA3P12429 323 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 TCF7P36402 384 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 DPY19L2Q6NUT2 758 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 MILR1Q7Z6M3 343 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 DNAJC10Q8IXB1 793 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CD300LFQ8TDQ1 290 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 DCAF4Q8WV16 495 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SNAPC3Q92966 411 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 KAT5Q92993 513 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 HDAC10Q969S8 669 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ARMC5Q96C12 935 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ZFP3Q96NJ6 502 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NIF3L1Q9GZT8 377 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 C2orf40Q9H1Z8 148 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NTN4Q9HB63 628 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SAMD4AQ9UPU9 718 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 STXBP5LQ9Y2K9 1186 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 JCADQ9P266 1359 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 URB2Q14146 1524 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 ZNF705EA8MWA4 302 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 WWP2O00308 870 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 XPNPEP2O43895 674 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 GLP2RO95838 553 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ZNF35P13682 527 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 MPSTP25325 297 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 IDH3AP50213 366 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ERVK-25P63136 954 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 DCAF6Q58WW2 860 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 KRBOX4Q5JUW0 171 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 C1QTNF12Q5T7M4 302 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 PAQR7Q86WK9 346 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 PLCZ1Q86YW0 608 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SCN4BQ8IWT1 228 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 PDZD9Q8IXQ8 264 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 MIPEPQ99797 713 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 C12orf65Q9H3J6 166 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 GFOD1Q9NXC2 390 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 RPS6KB2Q9UBS0 482 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 TCRBV9S1A1TA0A576 114 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ANKRD34BA5PLL1 514 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 H7C1W4 665 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 DFNA5O60443 496 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 ITGAVP06756 1048 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 NFICP08651 508 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CREB1P16220 341 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 FADDQ13158 208 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SPOUT1Q5T280 376 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 PGM2L1Q6PCE3 622 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CORO6Q6QEF8 472 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CHPFQ8IZ52 775 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SLC43A3Q8NBI5 491 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 CLP1Q92989 425 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 FAM49AQ9H0Q0 323 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 SENP2Q9HC62 589 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 SEMA4BQ9NPR2 832 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 TOPORSQ9NS56 1045 aaPredicted RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 NUDT15Q9NV35 164 aa8.75□□□□□ -1.01
YBX3-208ENST00000540447 DDX43Q9NXZ2 648 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 EIF2B4Q9UI10 523 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 YARS2Q9Y2Z4 477 aaKnown RBP8.75□□□□□ -1.01
YBX3-208ENST00000540447 CLUHO75153 1309 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms