RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ITPK1Q13572 414 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 C15orf59Q2T9L4 293 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 POTEHQ6S545 545 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 RBM44Q6ZP01 1051 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 FAM92BQ6ZTR7 304 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ALLCQ8N6M5 410 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 VGLL2Q8N8G2 317 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PTCD2Q8WV60 388 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 XPR1Q9UBH6 696 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 SAMD4AQ9UPU9 718 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 DDTLA6NHG4 134 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 MANSC4A6NHS7 340 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 BBIP1A8MTZ0 92 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ENTPD5O75356 428 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ITGAVP06756 1048 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 THRBP10828 461 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 EPHX2P34913 555 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 GABRB2P47870 512 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 HSF2Q03933 536 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 MAMLD1Q13495 774 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 NBPF12Q5TAG4 269 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 IQSEC1Q6DN90 963 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CHSY3Q70JA7 882 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 DET1Q7L5Y6 550 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 HJURPQ8NCD3 748 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 HEXDCQ8WVB3 486 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CLP1Q92989 425 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 RAD51AP1Q96B01 352 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 C1GALT1C1Q96EU7 318 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ZBTB45Q96K62 511 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TM6SF2Q9BZW4 377 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TRIM2Q9C040 744 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 FKBP14Q9NWM8 211 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TUBA8Q9NY65 449 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ZNHIT2Q9UHR6 403 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PFDN2Q9UHV9 154 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ZNF214Q9UL59 606 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PCDHGB3Q9Y5G1 929 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 LAMB1P07942 1786 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TCRBV5S4A2TA0A5A2 114 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 H0Y858 1186 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TRIM3O75382 744 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 FGF1P05230 155 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 KLRK1P26718 216 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CRADDP78560 199 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PPP2R2BQ00005 443 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 FNBP1LQ5T0N5 605 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 RBFAQ8N0V3 343 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 MREGQ8N565 214 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PHC3Q8NDX5 983 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TRAPPC12Q8WVT3 735 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 HOPXQ9BPY8 73 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 SEMA3GQ9NS98 782 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 EFR3BQ9Y2G0 817 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 GPSM3Q9Y4H4 160 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PCDHGA3Q9Y5H0 932 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 ABHD14A-ACY1A0A1B0GW23 586 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 PLK4O00444 970 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TAS2R41P59536 307 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CREMQ03060 361 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 MBTD1Q05BQ5 628 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 WSCD1Q658N2 575 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 KLHL35Q6PF15 583 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 FAM131AQ6UXB0 335 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 KIAA1324Q6UXG2 1013 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 BEND5Q7L4P6 421 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 SLC34A3Q8N130 599 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 BEND7Q8N7W2 519 aaPredicted RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 OR2T12Q8NG77 320 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 GIPC3Q8TF64 312 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CRELD1Q96HD1 420 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 TRNT1Q96Q11 434 aaKnown RBP10.64□□□□□ -0.71
CLIP1-209ENST00000537178 CNPPD1Q9BV87 410 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 MFSD1Q9H3U5 465 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 LRRC19Q9H756 370 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 POLLQ9UGP5 575 aa10.64□□□□□ -0.71
CLIP1-209ENST00000537178 A0A087X0B3 334 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 PDHXO00330 501 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 SLC22A3O75751 556 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 ERBB2P04626 1255 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 ITPKBP27987 946 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 SLC7A2P52569 658 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 PTPN5P54829 565 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 CDK18Q07002 472 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 IKBKEQ14164 716 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 TNFAIP8L3Q5GJ75 292 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 AKAP14Q86UN6 197 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 C12orf56Q8IXR9 622 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 ZNF558Q96NG5 402 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 BRD9Q9H8M2 597 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 ASAH2Q9NR71 780 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 ASF1AQ9Y294 204 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 SCN7AQ01118 1682 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 A0A1W2PQ72 361 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 LRRC10BA6NIK2 292 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 FAM86B1E9PN63 330 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 CHST10O43529 356 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 PRMT3O60678 531 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 UGT2B17O75795 530 aa10.63□□□□□ -0.71
CLIP1-209ENST00000537178 CYP1A2P05177 515 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms