RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SKOR1P84550 965 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 ZBED6P86452 979 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 CDK3Q00526 305 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 CLN3Q13286 438 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 HLTFQ14527 1009 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS28-215ENST00000531924 IQCB1Q15051 598 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 AMZ1Q400G9 498 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 DOK6Q6PKX4 331 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 Q6ZVL8 140 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 PIM3Q86V86 326 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 ZNF843Q8N446 348 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS28-215ENST00000531924 KCTD6Q8NC69 237 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 IQCDQ96DY2 449 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 SCRN2Q96FV2 425 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 NSMCE3Q96MG7 304 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 SEMA3CQ99985 751 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 TEX101Q9BY14 249 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 POLR1EQ9GZS1 481 aaKnown RBP14.72□□□□□ -0.05
VPS28-215ENST00000531924 ZMYND15Q9H091 742 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 TRNAU1APQ9NX07 287 aaKnown RBP14.72□□□□□ -0.05
VPS28-215ENST00000531924 SEPT10Q9P0V9 454 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 RCOR3Q9P2K3 495 aaPredicted RBP14.72□□□□□ -0.05
VPS28-215ENST00000531924 LUC7L2Q9Y383 392 aaKnown RBP14.72□□□□□ -0.05
VPS28-215ENST00000531924 PCDHB11Q9Y5F2 797 aa14.72□□□□□ -0.05
VPS28-215ENST00000531924 SHROOM3Q8TF72 1996 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 NPIPB15A6NHN6 443 aaPredicted RBP14.71□□□□□ -0.05
VPS28-215ENST00000531924 K7ENP7 123 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 CYP1A2P05177 515 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 CEACAM5P06731 702 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 CA4P22748 312 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 CES1P23141 567 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 MAPK10P53779 464 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 TMEM164Q5U3C3 297 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 HGSNATQ68CP4 663 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 TXNRD3NBQ6F5E7 133 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 TIGD7Q6NT04 549 aaPredicted RBP14.71□□□□□ -0.05
VPS28-215ENST00000531924 ALKBH5Q6P6C2 394 aaKnown RBP14.71□□□□□ -0.05
VPS28-215ENST00000531924 INO80CQ6PI98 192 aaPredicted RBP14.71□□□□□ -0.05
VPS28-215ENST00000531924 SLC30A9Q6PML9 568 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 LUZP1Q86V48 1076 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 MAP7D3Q8IWC1 876 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 PELI3Q8N2H9 469 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 GPBAR1Q8TDU6 330 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 AP2M1Q96CW1 435 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 CDH19Q9H159 772 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 SPATS2LQ9NUQ6 558 aaKnown RBP14.71□□□□□ -0.05
VPS28-215ENST00000531924 TAAR2Q9P1P5 351 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 SUFUQ9UMX1 484 aa14.71□□□□□ -0.05
VPS28-215ENST00000531924 A0A087X0T9 212 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 SYCE3A1L190 88 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 NVLO15381 856 aaKnown RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 CPNE6O95741 557 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 PYGLP06737 847 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 FAM228BP0C875 321 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 LHCGRP22888 699 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 POLD2P49005 469 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 MAZP56270 477 aaKnown RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 OR1D5P58170 312 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 SLC25A11Q02978 314 aaKnown RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 MMRN1Q13201 1228 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 KIAA1614Q5VZ46 1190 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 USP53Q70EK8 1073 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 TSPAN33Q86UF1 283 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 SFTPA2Q8IWL1 248 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 SNRNP27Q8WVK2 155 aaKnown RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 MCCC1Q96RQ3 725 aaPredicted RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 FRMD8Q9BZ67 464 aaPredicted RBP14.7□□□□□ -0.06
VPS28-215ENST00000531924 RDH14Q9HBH5 336 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 CBX8Q9HC52 389 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 CTTNBP2NLQ9P2B4 639 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 CD84Q9UIB8 345 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 DNPEPQ9ULA0 475 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 CAPN11Q9UMQ6 739 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 MGAQ8IWI9 3026 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 RP1P56715 2156 aa14.7□□□□□ -0.06
VPS28-215ENST00000531924 ASMTLO95671 621 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ECEL1O95672 775 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 FGF1P05230 155 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 TPM3P06753 285 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 AK4P27144 223 aaPredicted RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 TEAD1P28347 426 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ADCY8P40145 1251 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 GARSP41250 739 aaKnown RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 ACTR1BP42025 376 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ACTR1AP61163 376 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 CTBSQ01459 385 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ZFP36L1Q07352 338 aaKnown RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 DPTQ07507 201 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 LY6DQ14210 128 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 IFI16Q16666 785 aaKnown RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 MANEAQ5SRI9 462 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 LRRC66Q68CR7 880 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 PCSK4Q6UW60 755 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 TEX26Q8N6G2 289 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ZSCAN1Q8NBB4 408 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ZNF564Q8TBZ8 553 aaPredicted RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 USP7Q93009 1102 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 ZNF830Q96NB3 372 aaPredicted RBP14.69□□□□□ -0.06
VPS28-215ENST00000531924 RBM22Q9NW64 420 aaKnown RBP eCLIP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms