RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZDHHC1Q8WTX9 485 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 PDCD6IPQ8WUM4 868 aaKnown RBP11.34□□□□□ -0.59
VPS28-214ENST00000531032 TEKT4Q8WW24 435 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SGF29Q96ES7 293 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SCRN2Q96FV2 425 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 B3GNT4Q9C0J1 378 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SEMA6CQ9H3T2 930 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS28-214ENST00000531032 FOXJ2Q9P0K8 574 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 TAAR2Q9P1P5 351 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 MYO1AQ9UBC5 1043 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 MOSPD1Q9UJG1 213 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 PHTF1Q9UMS5 762 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SUFUQ9UMX1 484 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 SLC17A4Q9Y2C5 497 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 PPIL1Q9Y3C6 166 aa11.34□□□□□ -0.59
VPS28-214ENST00000531032 A0A1B0GTH6 734 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 C9orf172C9J069 976 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PGLSO95336 258 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 ITGB2P05107 769 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 IVLP07476 585 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 RARAP10276 462 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 CD82P27701 267 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 SERPINB6P35237 376 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 MMP13P45452 471 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 GNPDA1P46926 289 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 CDH6P55285 790 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 MAXP61244 160 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 TPM4P67936 248 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 SLC25A11Q02978 314 aaKnown RBP11.33□□□□□ -0.6
VPS28-214ENST00000531032 DPTQ07507 201 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PIGHQ14442 188 aaPredicted RBP11.33□□□□□ -0.6
VPS28-214ENST00000531032 C16orf72Q14CZ0 275 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 LINC00303Q3SY05 128 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PHF19Q5T6S3 580 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 MARC1Q5VT66 337 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 DENND2CQ68D51 928 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 TXNRD3NBQ6F5E7 133 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 RAET1GQ6H3X3 334 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 XKR5Q6UX68 686 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 Q6ZVL8 140 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 USP45Q70EL2 814 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 TECPR1Q7Z6L1 1165 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 TSPAN33Q86UF1 283 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PIM3Q86V86 326 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 DTX1Q86Y01 620 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 TEX26Q8N6G2 289 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 NIPA2Q8N8Q9 360 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 EXD3Q8N9H8 876 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PTCD2Q8WV60 388 aaKnown RBP11.33□□□□□ -0.6
VPS28-214ENST00000531032 PIH1D2Q8WWB5 315 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 HSPH1Q92598 858 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 USP7Q93009 1102 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 SCARF2Q96GP6 870 aaPredicted RBP11.33□□□□□ -0.6
VPS28-214ENST00000531032 RDH14Q9HBH5 336 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 PCDH18Q9HCL0 1135 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 SEPT10Q9P0V9 454 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 ST14Q9Y5Y6 855 aa11.33□□□□□ -0.6
VPS28-214ENST00000531032 BOD1L1Q8NFC6 3051 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 RHPN2P1A8MT19 583 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 HGSO14964 777 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 ZW10O43264 779 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 FZD6O60353 706 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 ECEL1O95672 775 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 SOD1P00441 154 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 SKILP12757 684 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 PTMSP20962 102 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 AK4P27144 223 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 CD1CP29017 333 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 GPR3P46089 330 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 ZNF165P49910 485 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 MAPK10P53779 464 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 OR1D5P58170 312 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 CTBSQ01459 385 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 PEX6Q13608 980 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 PTPRRQ15256 657 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 AMZ1Q400G9 498 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 FIGNQ5HY92 759 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 ARMC12Q5T9G4 340 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 HGSNATQ68CP4 663 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 SLC30A9Q6PML9 568 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 ZNF574Q6ZN55 896 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 USP53Q70EK8 1073 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 ZFAND4Q86XD8 727 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 LRRC49Q8IUZ0 686 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 NAGSQ8N159 534 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 NSMCE1Q8WV22 266 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 NAP1L5Q96NT1 182 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 NUDT22Q9BRQ3 303 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 SUDS3Q9H7L9 328 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 WDR70Q9NW82 654 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 AKAP7Q9P0M2 348 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 RCOR3Q9P2K3 495 aaPredicted RBP11.32□□□□□ -0.6
VPS28-214ENST00000531032 PCDHGA4Q9Y5G9 962 aa11.32□□□□□ -0.6
VPS28-214ENST00000531032 MYO18BQ8IUG5 2567 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 IGHV5-10-1A0A0J9YXX1 117 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 GOLGA6CA6NDK9 693 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 GOLGA6BA6NDN3 693 aa11.31□□□□□ -0.6
VPS28-214ENST00000531032 AGRPO00253 132 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms