RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZNF248Q8NDW4 579 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 DENND6BQ8NEG7 585 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 IFI44Q8TCB0 444 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 MAPK15Q8TD08 544 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 PDCD6IPQ8WUM4 868 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 SLC39A7Q92504 469 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ECHDC3Q96DC8 303 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 BMFQ96LC9 184 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 AGAP3Q96P47 875 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 CEP41Q9BYV8 373 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ABCG4Q9H172 646 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 NOD2Q9HC29 1040 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 KLHL8Q9P2G9 620 aaPredicted RBP10.17□□□□□ -0.78
VPS28-204ENST00000526054 GGT7Q9UJ14 662 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 ITM2BQ9Y287 266 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 RAI2Q9Y5P3 530 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 HS3ST3A1Q9Y663 406 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 U3KQA8 63 aa10.17□□□□□ -0.78
VPS28-204ENST00000526054 HELZ2Q9BYK8 2649 aaKnown RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 TEX51A0A1B0GUA7 166 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TTC24A2A3L6 582 aaPredicted RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 CFAP69A5D8W1 941 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 IGLON5A6NGN9 336 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ESPNB1AK53 854 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TK2O00142 265 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 AQP9O43315 295 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 HTRA2O43464 458 aaPredicted RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 CEP104O60308 925 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 USP12O75317 370 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 CPP00450 1065 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 JUNDP17535 347 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 RBL1P28749 1068 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 THOP1P52888 689 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 GNG11P61952 73 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 CXADRP78310 365 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 C19orf57Q0VDD7 668 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 WASHC5Q12768 1159 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TRAF2Q12933 501 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 SLC14A2Q15849 920 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 CDKN3Q16667 212 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 UGP2Q16851 508 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ARMC12Q5T9G4 340 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ITPRIPL1Q6GPH6 555 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 GPR155Q7Z3F1 870 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 LSMEM2Q8N112 164 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 NDUFAF2Q8N183 169 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS28-204ENST00000526054 CNTD1Q8N815 330 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ARRDC2Q8TBH0 407 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 VOPP1Q96AW1 172 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 NAF1Q96HR8 494 aaKnown RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 PBKQ96KB5 322 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TEKT5Q96M29 485 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 ZNF578Q96N58 590 aaPredicted RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 KLF6Q99612 283 aaPredicted RBP10.16□□□□□ -0.78
VPS28-204ENST00000526054 FAM118BQ9BPY3 351 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 C1QTNF2Q9BXJ5 285 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 SLC25A51Q9H1U9 297 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 GLOD4Q9HC38 313 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 KCND1Q9NSA2 647 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 NCKIPSDQ9NZQ3 722 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TRHDEQ9UKU6 1024 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 PCDHGC4Q9Y5F7 938 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 CSNK1G3Q9Y6M4 447 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 LRRK1Q38SD2 2015 aa10.16□□□□□ -0.78
VPS28-204ENST00000526054 TCRBV7S2A1N4TA0A589 114 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 CPED1A4D0V7 1026 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 TRAFD1O14545 582 aaPredicted RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 RIOK3O14730 519 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 AREL1O15033 823 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 KCNN4O15554 427 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 SPINT1O43278 529 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 DXOO77932 396 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 PGLSO95336 258 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 FGGP02679 453 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 ATP1A1P05023 1023 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 CYP2A6P11509 494 aaPredicted RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 TIMP2P16035 220 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 CXCR5P32302 372 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 CD86P42081 329 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 EPHB1P54762 984 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PFN3P60673 137 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 NIPAL4Q0D2K0 466 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PTK2BQ14289 1009 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 LONRF2Q1L5Z9 754 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 DEFB133Q30KQ1 61 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 LRRC73Q5JTD7 316 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 TPRG1LQ5T0D9 272 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 BROXQ5VW32 411 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 GUSBP11Q6P575 273 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 PID1Q7Z2X4 250 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 EFL1Q7Z2Z2 1120 aaKnown RBP10.15□□□□□ -0.78
VPS28-204ENST00000526054 RBFAQ8N0V3 343 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 ZNF567Q8N184 647 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 SLC35B2Q8TB61 432 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 LMX1AQ8TE12 382 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 CXorf40AQ8TE69 158 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 BTN2A2Q8WVV5 523 aa10.15□□□□□ -0.78
VPS28-204ENST00000526054 SPOCK2Q92563 424 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms