RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SH3BP4Q9P0V3 963 aa4.72□□□□□ -1.65
USP48-211ENST00000526044 LUZP4Q9P127 313 aa4.72□□□□□ -1.65
USP48-211ENST00000526044 ARMCX3Q9UH62 379 aaPredicted RBP4.72□□□□□ -1.65
USP48-211ENST00000526044 CPSF3Q9UKF6 684 aaKnown RBP4.72□□□□□ -1.65
USP48-211ENST00000526044 ZMYND8Q9ULU4 1186 aaPredicted RBP4.72□□□□□ -1.65
USP48-211ENST00000526044 HES2Q9Y543 173 aa4.72□□□□□ -1.65
USP48-211ENST00000526044 TRIP11Q15643 1979 aa4.72□□□□□ -1.65
USP48-211ENST00000526044 CITO14578 2027 aa4.72□□□□□ -1.65
USP48-211ENST00000526044 TANC1Q9C0D5 1861 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TTC26A0AVF1 554 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 GOLGA6L3A6NEY3 463 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PRSS47A8MTI9 375 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 AP4M1O00189 453 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PMM2O15305 246 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 FAM189A1O60320 539 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 STX10O60499 249 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PMPCBO75439 489 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 BAIAP3O94812 1187 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 ADRB2P07550 413 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 DLATP10515 647 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 ATP1A3P13637 1013 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 HGFP14210 728 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 ZNF18P17022 549 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 GKP32189 559 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 GTF2H1P32780 548 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 RGS19P49795 217 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 VAMP7P51809 220 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PGDP52209 483 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 AP3M2P53677 418 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TIRAPP58753 221 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 SUMO2P61956 95 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 HOXA4Q00056 320 aaPredicted RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 TIAL1Q01085 375 aaKnown RBP eCLIP4.71□□□□□ -1.66
USP48-211ENST00000526044 E2F1Q01094 437 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 ENPEPQ07075 957 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 CETN1Q12798 172 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PSMD6Q15008 389 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 CYP1B1Q16678 543 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 LONRF1Q17RB8 773 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TCTN1Q2MV58 587 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 MZT2AQ6P582 158 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 ALKAL1Q6UXT8 129 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 NAPRTQ6XQN6 538 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.71□□□□□ -1.66
USP48-211ENST00000526044 SUGP1Q8IWZ8 645 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 PARD3BQ8TEW8 1205 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 HASPINQ8TF76 798 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 SECISBP2LQ93073 1101 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 TOP1MTQ969P6 601 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 REPS1Q96D71 796 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 CNOT6LQ96LI5 555 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 LENG8Q96PV6 779 aaPredicted RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 PRR25Q96S07 402 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 GAD1Q99259 594 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TBCBQ99426 244 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TUBGCP2Q9BSJ2 902 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 THAP7Q9BT49 309 aaPredicted RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 MTIF3Q9H2K0 278 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 ASB7Q9H672 318 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 PDE11AQ9HCR9 933 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TMEM161AQ9NX61 479 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 LIMA1Q9UHB6 759 aaKnown RBP4.71□□□□□ -1.66
USP48-211ENST00000526044 AMFRQ9UKV5 643 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 ANK1P16157 1881 aa4.71□□□□□ -1.66
USP48-211ENST00000526044 TET1Q8NFU7 2136 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 TDRD15B5MCY1 1934 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 SMIM28A0A1B0GU29 152 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 ANO9A1A5B4 782 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 POM121BA6NF01 834 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 ARL5CA6NH57 179 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 LRRIQ3A6PVS8 624 aaPredicted RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 M0R3H8 397 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 PES1O00541 588 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 AREL1O15033 823 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 KPNA5O15131 536 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 PIP5K1CO60331 668 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 RBMXL2O75526 392 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 TCEA3O75764 348 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 TNNC2P02585 160 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 AFPP02771 609 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 PTMAP06454 111 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 TRIM49P0CI25 452 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 TRIM49CP0CI26 452 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 CXCL8P10145 99 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 KCNE1P15382 129 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 RRM1P23921 792 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 GCLMP48507 274 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 FMO5P49326 533 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 COPB1P53618 953 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 TERF1P54274 439 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 UBASH3AP57075 661 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 PROK1P58294 105 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 C21orf58P58505 322 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 CYP4F2P78329 520 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 TFAMQ00059 246 aaKnown RBP4.7□□□□□ -1.66
USP48-211ENST00000526044 UBXN1Q04323 297 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 BFSP1Q12934 665 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 TMEM132DQ14C87 1099 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 KRT31Q15323 416 aa4.7□□□□□ -1.66
USP48-211ENST00000526044 ZBTB6Q15916 424 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms