RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NPLOC4Q8TAT6 608 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 EMILIN2Q9BXX0 1053 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 PPM1HQ9ULR3 514 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 MATN3O15232 486 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 MAGEC1O60732 1142 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RPL5P46777 297 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RPS24P62847 133 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SP3Q02447 781 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RUNX1T1Q06455 604 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ABRQ12979 859 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 LIN52Q52LA3 116 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 PRMT9Q6P2P2 845 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 CRYBG2Q8N1P7 616 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 C19orf60Q96EN9 201 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ASB2Q96Q27 587 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ACBD6Q9BR61 282 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ACAT2Q9BWD1 397 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 A0A087WXM4 84 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 TRAFD1O14545 582 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ARHGEF9O43307 516 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 ANXA5P08758 320 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 CCDC159P0C7I6 412 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 OR56A5P0C7T3 313 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 CCNCP24863 283 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 TKTP29401 623 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 SERPINB1P30740 379 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 MAP3K10Q02779 954 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 CDCA2Q69YH5 1023 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 PNPLA1Q8N8W4 532 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 OR13C4Q8NGS5 318 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 RDH11Q8TC12 318 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 DGCR14Q96DF8 476 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 PTCD3Q96EY7 689 aaKnown RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 OTUB1Q96FW1 271 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 STRA6Q9BX79 667 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 PCDH12Q9NPG4 1184 aa11.7□□□□□ -0.54
SYNPO-204ENST00000519664 EVLQ9UI08 416 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-204ENST00000519664 FAM72CH0Y354 149 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TYROBPO43914 113 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 BEST1O76090 585 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 DGKAP23743 735 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 MAPK1P28482 360 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 CSTF3Q12996 717 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TSNQ15631 228 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 FAM72AQ5TYM5 149 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 FAM72DQ6L9T8 149 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 AAGABQ6PD74 315 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 C15orf39Q6ZRI6 1047 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TMEM26Q6ZUK4 368 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 SLC24A5Q71RS6 500 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 FAM72BQ86X60 149 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 LRRC49Q8IUZ0 686 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ELMO1Q92556 727 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PRR11Q96HE9 360 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 NMUR1Q9HB89 426 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 LEF1Q9UJU2 399 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PRPF19Q9UMS4 504 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 WDR37Q9Y2I8 494 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 AHSGP02765 367 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 HOXB8P17481 243 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 AQP1P29972 269 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 GGT5P36269 586 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 AIF1P55008 147 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 SKIV2LQ15477 1246 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 SH3D19Q5HYK7 790 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 AFTPHQ6ULP2 937 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PLD6Q8N2A8 252 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 RPL10LQ96L21 214 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ZNF570Q96NI8 536 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 CDK5RAP1Q96SZ6 601 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 TMEM106CQ9BVX2 250 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ATAD3AQ9NVI7 634 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PDZK1P1A8MUH7 402 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 LSM1O15116 133 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 COX7A2P14406 83 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 CYP2A7P20853 494 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 SLC10A2Q12908 348 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PTPRCAPQ14761 206 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 VARS2Q5ST30 1063 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 GPR107Q5VW38 600 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ZYG11AQ6WRX3 759 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 FRMD7Q6ZUT3 714 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ANKS3Q6ZW76 656 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PANX3Q96QZ0 392 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 YIPF2Q9BWQ6 316 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 C6orf203Q9P0P8 240 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 IGSF9Q9P2J2 1179 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 DYRK1BQ9Y463 629 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 RAI2Q9Y5P3 530 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 H3BMM5 538 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 GOT2P00505 430 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 CNPP09543 421 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 IQCF3P0C7M6 154 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PKMP14618 531 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 NCK1P16333 377 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 CORO1AP31146 461 aaKnown RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 PRSS55Q6UWB4 352 aaPredicted RBP11.69□□□□□ -0.54
SYNPO-204ENST00000519664 NUDT18Q6ZVK8 323 aa11.69□□□□□ -0.54
SYNPO-204ENST00000519664 ITIH5Q86UX2 942 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms