RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 GOLGA6CA6NDK9 693 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 GOLGA6BA6NDN3 693 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 B4DGG1 531 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 GOLGA6DP0CG33 693 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 CTPS1P17812 591 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 EPHB1P54762 984 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 TAS2R40P59535 323 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 ILF3Q12906 894 aaKnown RBP eCLIP17.46■□□□□ 0.39
DDX41-217ENST00000515562 EIF3IQ13347 325 aaKnown RBP17.46■□□□□ 0.39
DDX41-217ENST00000515562 C14orf28Q4W4Y0 310 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 LRRC66Q68CR7 880 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 OGFOD3Q6PK18 319 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 Q6ZVL8 140 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 TSPAN33Q86UF1 283 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 CPNE8Q86YQ8 564 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 CCNJLQ8IV13 435 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 HDAC11Q96DB2 347 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 CCDC97Q96F63 343 aaPredicted RBP17.46■□□□□ 0.39
DDX41-217ENST00000515562 TDRD1Q9BXT4 1180 aaKnown RBP17.46■□□□□ 0.39
DDX41-217ENST00000515562 GSDMCQ9BYG8 508 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 FRMD8Q9BZ67 464 aaPredicted RBP17.46■□□□□ 0.39
DDX41-217ENST00000515562 DPH1Q9BZG8 443 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 STRADBQ9C0K7 418 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 ABHD10Q9NUJ1 306 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 RBM22Q9NW64 420 aaKnown RBP eCLIP17.46■□□□□ 0.39
DDX41-217ENST00000515562 TRNAU1APQ9NX07 287 aaKnown RBP17.46■□□□□ 0.39
DDX41-217ENST00000515562 GOLGA6AQ9NYA3 693 aa17.46■□□□□ 0.39
DDX41-217ENST00000515562 A0A0J9YYE9 177 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 CAPN8A6NHC0 703 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 EIF4E1BA6NMX2 242 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 ZNF487B1APH4 448 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 CASC3O15234 703 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 NUDT21O43809 227 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 NOBOXO60393 691 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 MAP3K6O95382 1288 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 TRBC1P01850 177 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 CEACAM5P06731 702 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 PYGLP06737 847 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 PDHA1P08559 390 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 CCNB1P14635 433 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 TMPRSS3P57727 454 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 RPL26P61254 145 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 CCL7P80098 99 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 DSC2Q02487 901 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 GBE1Q04446 702 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 PEX6Q13608 980 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 HLTFQ14527 1009 aaKnown RBP eCLIP17.45■□□□□ 0.38
DDX41-217ENST00000515562 ZNF765Q7L2R6 523 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 GPR155Q7Z3F1 870 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 TECPR1Q7Z6L1 1165 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 VSIG1Q86XK7 387 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 RHOT2Q8IXI1 618 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 RAVER1Q8IY67 606 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 PQLC3Q8N755 202 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 GPBAR1Q8TDU6 330 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 PRR11Q96HE9 360 aaPredicted RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 NAF1Q96HR8 494 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 TMEM74Q96NL1 305 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 LRRN3Q9H3W5 708 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 RPL26L1Q9UNX3 145 aaKnown RBP17.45■□□□□ 0.38
DDX41-217ENST00000515562 SLC17A4Q9Y2C5 497 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 PTPRQQ9UMZ3 2332 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 ATRXP46100 2492 aa17.45■□□□□ 0.38
DDX41-217ENST00000515562 TEX51A0A1B0GUA7 166 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 A0A1W2PQM1 296 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CDRT15L2A8MXV6 281 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 MFAP3LO75121 409 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 IVLP07476 585 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 ITGA2BP08514 1039 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CCKBRP32239 447 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 ARHGAP25P42331 645 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 GPR1P46091 355 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 GNPDA1P46926 289 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 INHBCP55103 352 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 COL9A2Q14055 689 aaPredicted RBP17.44■□□□□ 0.38
DDX41-217ENST00000515562 MESDQ14696 234 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 FOXR1Q6PIV2 292 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 ADAMTSL4Q6UY14 1074 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CLEC14AQ86T13 490 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 VSTM4Q8IW00 320 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CCDC13Q8IYE1 715 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CCNYQ8ND76 341 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CCL4L1Q8NHW4 92 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 AP2M1Q96CW1 435 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CCDC42Q96M95 316 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 BBC3Q96PG8 261 aaPredicted RBP17.44■□□□□ 0.38
DDX41-217ENST00000515562 ANP32EQ9BTT0 268 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 CDH19Q9H159 772 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 EPB41L5Q9HCM4 733 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 DTLQ9NZJ0 730 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 LRIT1Q9P2V4 623 aa17.44■□□□□ 0.38
DDX41-217ENST00000515562 LRRD1A4D1F6 860 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 PLD2O14939 933 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 TNFSF15O95150 251 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 SOD1P00441 154 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 HLA-DQB2P05538 268 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 KDELR1P24390 212 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 STC1P52823 247 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 CXADRP78310 365 aa17.43■□□□□ 0.38
DDX41-217ENST00000515562 SKOR1P84550 965 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms