RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 PPP2CAP67775 309 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 ACVR1Q04771 509 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 CRYMQ14894 314 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 SLMAPQ14BN4 828 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 BRD3Q15059 726 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 KYNUQ16719 465 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 MAP7D1Q3KQU3 841 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 ARMC3Q5W041 872 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 SEL1L3Q68CR1 1132 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 EMBQ6PCB8 327 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 CAPN12Q6ZSI9 719 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 TECPR1Q7Z6L1 1165 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 CXorf40AQ8TE69 158 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 CAVIN3Q969G5 261 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 COQ10AQ96MF6 247 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 NAT9Q9BTE0 207 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 BTBD1Q9H0C5 482 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 EPB41L4BQ9H329 900 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 SGK2Q9HBY8 427 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 LRRC4CQ9HCJ2 640 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 PREBQ9HCU5 417 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 WSB2Q9NYS7 404 aaPredicted RBP14.17□□□□□ -0.14
RNF4-208ENST00000507247 INVSQ9Y283 1065 aa14.17□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3DA0A087WVF3 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3IA0A087WXS9 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3EA0A087X179 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3KA0A087X1G2 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 CCDC151A5D8V7 595 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3FA6NER0 549 aaPredicted RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 IGLON5A6NGN9 336 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 FAM47DPA6NHR8 397 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 C10orf142B7Z368 130 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3LB9A6J9 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 RNGTTO60942 597 aaKnown RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 ZNF217O75362 1048 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 RPP40O75818 363 aaKnown RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 SEMA4FO95754 770 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3HP0C7X1 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 ARNTP27540 789 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 CD6P30203 668 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 AVPR2P30518 371 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 ETV3P41162 512 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 SPINT3P49223 89 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 PMS2P54278 862 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 PDE1BQ01064 536 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 LAMB3Q13751 1172 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 FGL2Q14314 439 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 ACOX1Q15067 660 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 SMAD1Q15797 465 aaKnown RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 SPANXN3Q5MJ09 141 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3GQ6DHY5 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3CQ6IPX1 549 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 Q6ZVL8 140 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 NLRP9Q7RTR0 991 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 CCNJLQ8IV13 435 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 UNC5BQ8IZJ1 945 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBC1D3Q8IZP1 549 aaPredicted RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 GPR26Q8NDV2 337 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 OR2T34Q8NGX1 318 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 PEX13Q92968 403 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 TOE1Q96GM8 510 aaKnown RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 TBATAQ96M53 351 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 KDM4CQ9H3R0 1056 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 SUDS3Q9H7L9 328 aaPredicted RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 PKD2L2Q9NZM6 624 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 IL1RAPL1Q9NZN1 696 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 CD84Q9UIB8 345 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 FKBPLQ9UIM3 349 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 MBD1Q9UIS9 605 aaPredicted RBP14.16□□□□□ -0.14
RNF4-208ENST00000507247 PKP3Q9Y446 797 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 FAM169AQ9Y6X4 670 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 ZNF318Q5VUA4 2279 aa14.16□□□□□ -0.14
RNF4-208ENST00000507247 A0A1W2PQU0 124 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 OR51F1A6NGY5 319 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 GAPDHSO14556 408 aaPredicted RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 RECQL5O94762 991 aaPredicted RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 ACSL3O95573 720 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 TTC4O95801 387 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 POLBP06746 335 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 OXTRP30559 389 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 ARCN1P48444 511 aaKnown RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 FNTBP49356 437 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 XIAPP98170 497 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 CREB5Q02930 508 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 CSTF1Q05048 431 aaKnown RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 PEX6Q13608 980 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 UAP1Q16222 522 aaPredicted RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 SKIDA1Q1XH10 827 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 MAP9Q49MG5 647 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 TMEM259Q4ZIN3 620 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 KIAA0930Q6ICG6 404 aaPredicted RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 KIAA1161Q6NSJ0 714 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 TRMT10BQ6PF06 316 aaKnown RBP14.15□□□□□ -0.14
RNF4-208ENST00000507247 HORMAD1Q86X24 394 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 PALM2Q8IXS6 379 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.15□□□□□ -0.14
RNF4-208ENST00000507247 GSDMBQ8TAX9 411 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 KLK6Q92876 244 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 HDAC10Q969S8 669 aa14.15□□□□□ -0.14
RNF4-208ENST00000507247 DTD2Q96FN9 168 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms