RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PYDC1Q8WXC3 89 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 USP13Q92995 863 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 TRMT2BQ96GJ1 504 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 CDKN2AIPNLQ96HQ2 116 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 SLC25A23Q9BV35 468 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 TDRD1Q9BXT4 1180 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 DERL2Q9GZP9 239 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 GSTO2Q9H4Y5 243 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PFDN4Q9NQP4 134 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 TAS2R13Q9NYV9 303 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 MARCH4Q9P2E8 410 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 TRAF6Q9Y4K3 522 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ARL5AQ9Y689 179 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 NEMP2A6NFY4 417 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 BBIP1A8MTZ0 92 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PSMD12O00232 456 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 MUSKO15146 869 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 BUD23O43709 281 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 KERAO60938 352 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 VPS4BO75351 444 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 NDUFS3O75489 264 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 SKAP2O75563 359 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 SUPT7LO94864 414 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ENO3P13929 434 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 HNRNPLP14866 589 aaKnown RBP eCLIP11.97□□□□□ -0.49
NUP54-202ENST00000502850 RAG1P15918 1043 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 CR2P20023 1033 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 SLC6A4P31645 630 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PSMD8P48556 350 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 TTPAP49638 278 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ACADVLP49748 655 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PGGT1BP53609 377 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ATN1P54259 1190 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 RAD51Q06609 339 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 IHHQ14623 411 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 MMEL1Q495T6 779 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 RARS2Q5T160 578 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 KIAA1841Q6NSI8 718 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PRSS55Q6UWB4 352 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 HACD2Q6Y1H2 254 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 CRIPAKQ8N1N5 446 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 NKAPQ8N5F7 415 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 STAG3L4Q8TBR4 150 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ANKRD49Q8WVL7 239 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 RMDN1Q96DB5 314 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 MYRFLQ96LU7 910 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 BTBD9Q96Q07 612 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 SPON2Q9BUD6 331 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PDP2Q9P2J9 529 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 SUCOQ9UBS9 1254 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 AGO1Q9UL18 857 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 TBC1D30Q9Y2I9 924 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 CRYL1Q9Y2S2 319 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 MICAL3Q7RTP6 2002 aa11.96□□□□□ -0.49
NUP54-202ENST00000502850 LCHNA4D1U4 455 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 TMEM233B4DJY2 109 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 H3BNC9 293 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 TRIM38O00635 465 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 VPS26AO75436 327 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 RHOBTB1O94844 696 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 STAMBPO95630 424 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 SLC4A1P02730 911 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 CXCL10P02778 98 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 JUNP05412 331 aaKnown RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 FGF4P08620 206 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 LPOP22079 712 aaPredicted RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 CORO1AP31146 461 aaKnown RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 MAGEA10P43363 369 aaPredicted RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 ALDH1A3P47895 512 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 GATMP50440 423 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 PTK2BQ14289 1009 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 FASTKQ14296 549 aaKnown RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 ZNF423Q2M1K9 1284 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 PPM1LQ5SGD2 360 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 ADGRF1Q5T601 910 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 TMEM198Q66K66 360 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 TMEM154Q6P9G4 183 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 TXNDC11Q6PKC3 985 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 PDSS2Q86YH6 399 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 DENND1CQ8IV53 801 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 CFAP52Q8N1V2 620 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 OR7D4Q8NG98 312 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 KIAA1191Q96A73 305 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 PHF21BQ96EK2 531 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 C19orf60Q96EN9 201 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 CDRT15Q96T59 188 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 UNKQ9C0B0 810 aaKnown RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 Q9H521 79 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 SARDHQ9UL12 918 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 MAFFQ9ULX9 164 aa11.96□□□□□ -0.5
NUP54-202ENST00000502850 G3BP2Q9UN86 482 aaKnown RBP11.96□□□□□ -0.5
NUP54-202ENST00000502850 A0A0D9SEW6 157 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 OR51F1A6NGY5 319 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 COCHO43405 550 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 BCAS2O75934 225 aaPredicted RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 STC2O76061 302 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 SRP72O76094 671 aaKnown RBP11.95□□□□□ -0.5
NUP54-202ENST00000502850 EFEMP2O95967 443 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 GFAPP14136 432 aa11.95□□□□□ -0.5
NUP54-202ENST00000502850 KCNA5P22460 613 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms