RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM114A1Q8IWE2 563 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 CCDC185Q8N715 623 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 RTL3Q8N8U3 475 aaKnown RBP16.45■□□□□ 0.22
VIM-208ENST00000497849 FRMD8Q9BZ67 464 aaPredicted RBP16.45■□□□□ 0.22
VIM-208ENST00000497849 SIX2Q9NPC8 291 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 CTNND2Q9UQB3 1225 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 PLEKHM1Q9Y4G2 1056 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 RPS6KL1Q9Y6S9 549 aa16.45■□□□□ 0.22
VIM-208ENST00000497849 POLQO75417 2590 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 BICDL2A1A5D9 508 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 A8MX80 341 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 RASA4BC9J798 803 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 RASA4O43374 803 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 RFPL1O75677 317 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 DDAH2O95865 285 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 PON1P27169 355 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 TNFRSF8P28908 595 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 MAN1A1P33908 653 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 PPP1R2P41236 205 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 RGRP47804 291 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 MAP7Q14244 749 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 ERV3-1Q14264 604 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 CCDC14Q49A88 953 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 SMYD5Q6GMV2 418 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 DPPA4Q7L190 304 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 MAMDC2Q7Z304 686 aaPredicted RBP16.44■□□□□ 0.22
VIM-208ENST00000497849 ESX1Q8N693 406 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 ECHDC3Q96DC8 303 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 TUBGCP5Q96RT8 1024 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 TEX101Q9BY14 249 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 PDFQ9HBH1 243 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 METTL5Q9NRN9 209 aaKnown RBP16.44■□□□□ 0.22
VIM-208ENST00000497849 DNAJC12Q9UKB3 198 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 MAP4K5Q9Y4K4 846 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 PCDHB3Q9Y5E6 796 aa16.44■□□□□ 0.22
VIM-208ENST00000497849 OTOGQ6ZRI0 2925 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 ADCY8P40145 1251 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 FASLGP48023 281 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 POLD2P49005 469 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 YBEYP58557 167 aaPredicted RBP16.43■□□□□ 0.22
VIM-208ENST00000497849 ACOX1Q15067 660 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 CCDC183Q5T5S1 534 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 GBP6Q6ZN66 633 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 FAM71AQ8IYT1 594 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 RNF31Q96EP0 1072 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 AHCYL2Q96HN2 611 aaKnown RBP16.43■□□□□ 0.22
VIM-208ENST00000497849 COQ10AQ96MF6 247 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 ZMYND15Q9H091 742 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 PDCL3Q9H2J4 239 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 CASS4Q9NQ75 786 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 PHPT1Q9NRX4 125 aaPredicted RBP16.43■□□□□ 0.22
VIM-208ENST00000497849 UBA2Q9UBT2 640 aaPredicted RBP16.43■□□□□ 0.22
VIM-208ENST00000497849 POLHQ9Y253 713 aa16.43■□□□□ 0.22
VIM-208ENST00000497849 POLR1CO15160 346 aaPredicted RBP16.42■□□□□ 0.22
VIM-208ENST00000497849 DNAJB5O75953 348 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 CYP11B1P15538 503 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 DLSTP36957 453 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 ACTR1BP42025 376 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 PMS2P54278 862 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 ACTR1AP61163 376 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 CDK3Q00526 305 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 EXOC3L4Q17RC7 722 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 EIF2S3LQ2VIR3 472 aaKnown RBP16.42■□□□□ 0.22
VIM-208ENST00000497849 NADK2Q4G0N4 442 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 WDR74Q6RFH5 385 aaPredicted RBP16.42■□□□□ 0.22
VIM-208ENST00000497849 PYROXD2Q8N2H3 581 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 OR10G6Q8NH81 332 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 SLC37A2Q8TED4 501 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 RXFP2Q8WXD0 754 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 CROTQ9UKG9 612 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 SLC17A4Q9Y2C5 497 aa16.42■□□□□ 0.22
VIM-208ENST00000497849 TRBV23OR9-2A0A075B6M9 112 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 WIPF3A6NGB9 483 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 J3KR12 359 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 SORBS2O94875 1100 aaKnown RBP16.41■□□□□ 0.22
VIM-208ENST00000497849 ZNF28P17035 718 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 EPHB2P29323 1055 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 SERPINA4P29622 427 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 CSNK1DP48730 415 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 HDAC4P56524 1084 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 RIPPLY3P57055 190 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 PEX6Q13608 980 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 PARP15Q460N3 678 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.41■□□□□ 0.22
VIM-208ENST00000497849 TAF3Q5VWG9 929 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 SRLQ86TD4 932 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 UMODL1-AS1Q8N2C9 162 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 JOSD2Q8TAC2 188 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 CENPIQ92674 756 aaPredicted RBP16.41■□□□□ 0.22
VIM-208ENST00000497849 NUS1Q96E22 293 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 NSMCE3Q96MG7 304 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 SLC38A3Q99624 504 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 TRIM55Q9BYV6 548 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 ATP13A3Q9H7F0 1226 aa16.41■□□□□ 0.22
VIM-208ENST00000497849 SIDT1Q9NXL6 827 aaKnown RBP16.41■□□□□ 0.22
VIM-208ENST00000497849 OAS3Q9Y6K5 1087 aaKnown RBP16.41■□□□□ 0.22
VIM-208ENST00000497849 GTPBP10A4D1E9 387 aaKnown RBP16.4■□□□□ 0.22
VIM-208ENST00000497849 CDC14CA4D256 554 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 TCP11X1B4DZS4 312 aa16.4■□□□□ 0.22
VIM-208ENST00000497849 TRAFD1O14545 582 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms