RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SUFUQ9UMX1 484 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 A0A0G2JND7 137 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 HAUS5O94927 633 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 DNTTP04053 509 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 SRCP12931 536 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MYOGP15173 224 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 FMO4P31512 558 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CHRNA4P43681 627 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 NEK3P51956 506 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 PPARDQ03181 441 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MAP7D1Q3KQU3 841 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 LDLRAP1Q5SW96 308 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 TMEM25Q86YD3 366 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 MFSD6LQ8IWD5 586 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 CBARPQ8N350 705 aaPredicted RBP8.37□□□□□ -1.07
USP54-215ENST00000497106 GPR150Q8NGU9 434 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 OMDQ99983 421 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 ZNF576Q9H609 170 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 PDFQ9HBH1 243 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 NDE1Q9NXR1 346 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 ZFP69BQ9UJL9 534 aa8.37□□□□□ -1.07
USP54-215ENST00000497106 A0A0J9YYE9 177 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CAPN8A6NHC0 703 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 KLHL2O95198 593 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 IL1BP01584 269 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 TRBC1P01850 177 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 RPN2P04844 631 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 C2P06681 752 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CD70P32970 193 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 BMP8BP34820 402 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 SLC1A2P43004 574 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CTBP1Q13363 440 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ACAP2Q15057 778 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 PTPRNQ16849 979 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 PUS10Q3MIT2 529 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 FSTL4Q6MZW2 842 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 PIWIL4Q7Z3Z4 852 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 EPB41L4BQ9H329 900 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 A0A1W2PPM1 405 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CYP17A1P05093 508 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 EPHX1P07099 455 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 KCNA4P22459 653 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 LEPRP48357 1165 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 CBX2Q14781 532 aaPredicted RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 ZNF805Q5CZA5 627 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 OTOAQ7RTW8 1153 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CNTN4Q8IWV2 1026 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 APCDD1Q8J025 514 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 PHC3Q8NDX5 983 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 INPP5DQ92835 1189 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 MCUR1Q96AQ8 359 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ELSPBP1Q96BH3 223 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ZSCAN5AQ9BUG6 496 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 FAM126AQ9BYI3 521 aaPredicted RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 FAM83DQ9H4H8 585 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 LHX3Q9UBR4 397 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 CCDC162PA2VCL2 907 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ZNF839A8K0R7 811 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 GOLGA8TH3BQL2 631 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 PRAMEF1O95521 474 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 BPGMP07738 259 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ARF5P84085 180 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ZNF534Q76KX8 674 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 ZC3HC1Q86WB0 502 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 CAMK1DQ8IU85 385 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 NPAS3Q8IXF0 933 aa8.36□□□□□ -1.07
USP54-215ENST00000497106 YBX2Q9Y2T7 364 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 KIAA0100Q14667 2235 aaKnown RBP8.36□□□□□ -1.07
USP54-215ENST00000497106 TRAFD1O14545 582 aaPredicted RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 ECI2O75521 394 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PCDH8O95206 1070 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 NSG1P42857 185 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PHEXP78562 749 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 RBBP7Q16576 425 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 EOGTQ5NDL2 527 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CILP2Q8IUL8 1156 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 NRSN1Q8IZ57 195 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TCAIMQ8N3R3 496 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 OR6K2Q8NGY2 324 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 MAGEC3Q8TD91 643 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TMEM159Q96B96 161 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 RPL10LQ96L21 214 aaKnown RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 SLC22A12Q96S37 553 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 EBF3Q9H4W6 596 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 RIC8BQ9NVN3 520 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 FKBPLQ9UIM3 349 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 CDYLQ9Y232 598 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 PSMD11O00231 422 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 TGDSO95455 350 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PIRTP0C851 137 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 BGNP21810 368 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ELAVL3Q14576 367 aaKnown RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 FAM78AQ5JUQ0 283 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 PRSS36Q5K4E3 855 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 LIPMQ5VYY2 423 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ZNF776Q68DI1 518 aaPredicted RBP8.35□□□□□ -1.07
USP54-215ENST00000497106 PGBD3Q8N328 593 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 FBXO39Q8N4B4 442 aa8.35□□□□□ -1.07
USP54-215ENST00000497106 ZNF514Q96K75 400 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms