RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RRN3Q9NYV6 651 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 CD207Q9UJ71 328 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 PADI1Q9ULC6 663 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 SUFUQ9UMX1 484 aa3.72□□□□□ -1.81
VPS50-219ENST00000495039 HSPB2A8KAH6 182 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 TSPAN3O60637 253 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 IGLV1-44P01699 117 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 CNPP09543 421 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 PCNAP12004 261 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 S1PR1P21453 382 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 CLCNKAP51800 687 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 UBE3AQ05086 875 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 TBL3Q12788 808 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 HSPB2Q16082 182 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 SLC18A3Q16572 532 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 SFMBT2Q5VUG0 894 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 SLC27A1Q6PCB7 646 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 NOTCH2NLQ7Z3S9 236 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 CERS3Q8IU89 383 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 CHERPQ8IWX8 916 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 RNF113BQ8IZP6 322 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 C1orf87Q8N0U7 546 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 STAMQ92783 540 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 SNAPC3Q92966 411 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 MASTLQ96GX5 879 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 ZC3HAV1LQ96H79 300 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 MAELQ96JY0 434 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 TWNKQ96RR1 684 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 REEP2Q9BRK0 252 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 TLR8Q9NR97 1041 aaKnown RBP3.71□□□□□ -1.82
VPS50-219ENST00000495039 NFE2L3Q9Y4A8 694 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 A3GALT2U3KPV4 340 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 CACNA1FO60840 1977 aa3.71□□□□□ -1.82
VPS50-219ENST00000495039 ADGRF5Q8IZF2 1346 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 VWA3AA6NCI4 1184 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 CBY3A6NI87 242 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 KLRF2D3W0D1 207 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 KLK10O43240 276 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 PTPN2P17706 415 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 CNTFP26441 200 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 CHRNB4P30926 498 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 GNB1P62873 340 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 EDRF1Q3B7T1 1238 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 STXBP5Q5T5C0 1151 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 MAP3K21Q5TCX8 1036 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 RGMBQ6NW40 437 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.7□□□□□ -1.82
VPS50-219ENST00000495039 LRRTM4Q86VH4 590 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 CPOQ8IVL8 374 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 DSELQ8IZU8 1212 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 SCCPDHQ8NBX0 429 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 HERVK_113Q902F9 699 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 RND1Q92730 232 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 ZNF689Q96CS4 500 aaPredicted RBP3.7□□□□□ -1.82
VPS50-219ENST00000495039 RNFT2Q96EX2 444 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 ZNF354BQ96LW1 612 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 WDR13Q9H1Z4 485 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 SAGE1Q9NXZ1 904 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.7□□□□□ -1.82
VPS50-219ENST00000495039 ZNF624Q9P2J8 865 aaPredicted RBP3.7□□□□□ -1.82
VPS50-219ENST00000495039 TINAGQ9UJW2 476 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 GTF2A1LQ9UNN4 478 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 GDAQ9Y2T3 454 aa3.7□□□□□ -1.82
VPS50-219ENST00000495039 LRRFIP2Q9Y608 721 aaKnown RBP3.7□□□□□ -1.82
VPS50-219ENST00000495039 NOTCH2Q04721 2471 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 A0A1W2PNU3 283 aaPredicted RBP3.69□□□□□ -1.82
VPS50-219ENST00000495039 CCDC189A1A4V9 331 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 GOLGA6L9A6NEM1 432 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 RRN3P2A6NIE6 340 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 HHLA1C9JL84 531 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 PEX12O00623 359 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 NCAM2O15394 837 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 PYGLP06737 847 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 POLBP06746 335 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 BLKP51451 505 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 NR1H2P55055 460 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 TLE2Q04725 743 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 CHRNDQ07001 517 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 GAGE5Q13069 117 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 GAGE6Q13070 117 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 ITGADQ13349 1161 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 BBS12Q6ZW61 710 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 TBC1D26Q86UD7 250 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 AGBL3Q8NEM8 1001 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 DUSP19Q8WTR2 217 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 TM9SF4Q92544 642 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 SH3KBP1Q96B97 665 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 ST6GAL2Q96JF0 529 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 HAUS8Q9BT25 410 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 PDZD7Q9H5P4 517 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 SMYD2Q9NRG4 433 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 PAK5Q9P286 719 aa3.69□□□□□ -1.82
VPS50-219ENST00000495039 ARHGAP10A1A4S6 786 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 SMIM1B2RUZ4 78 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 NR5A2O00482 541 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 WDR1O75083 606 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 CHRM4P08173 479 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 CLK1P49759 484 aaKnown RBP3.68□□□□□ -1.82
VPS50-219ENST00000495039 MMP14P50281 582 aa3.68□□□□□ -1.82
VPS50-219ENST00000495039 YWHAZP63104 245 aaKnown RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms