RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TNKS2Q9H2K2 1166 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZDHHC4Q9NPG8 344 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TMEM216Q9P0N5 145 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LSM7Q9UK45 103 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 A0A0D9SEW6 157 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FAM95CA0A1B0GW59 222 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BCLAF3A2AJT9 711 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GJB3O75712 270 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GJB5O95377 273 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CSF2RAP15509 400 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CORO1AP31146 461 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GKP32189 559 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GRM3Q14832 879 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RBBP7Q16576 425 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 USP41Q3LFD5 358 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CLLU1OSQ5K130 101 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PTRHD1Q6GMV3 140 aaKnown RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ATG14Q6ZNE5 492 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FLCNQ8NFG4 579 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DLG3Q92796 817 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ILKAPQ9H0C8 392 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RAD21L1Q9H4I0 556 aa10.76□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KCNU1A8MYU2 1149 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CCL16O15467 120 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FOXD2O60548 495 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GLRA3O75311 464 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HAPLN1P10915 354 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GRK2P25098 689 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PBLDP30039 288 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EPHB3P54753 998 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SEMA5AQ13591 1074 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FAM83EQ2M2I3 478 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ATXN7L2Q5T6C5 722 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FBXL22Q6P050 247 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DET1Q7L5Y6 550 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LINC00523Q86TU6 105 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HORMAD1Q86X24 394 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 MARCH7Q9H992 704 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NMRAL1Q9HBL8 299 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CDYLQ9Y232 598 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PCDHA11Q9Y5I1 949 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 H7C4K7 107 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PER2O15055 1255 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IRAK2O43187 625 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 C1RP00736 705 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 DDX39BQ13838 428 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OGFOD2Q6N063 350 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CCDC81Q6ZN84 652 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GLT6D1Q7Z4J2 308 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PEX5LQ8IYB4 626 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UBR7Q8N806 425 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FRMD8Q9BZ67 464 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PRDM16Q9HAZ2 1276 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GLOD4Q9HC38 313 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 RGS18Q9NS28 235 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CD274Q9NZQ7 290 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 XPR1Q9UBH6 696 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BAG5Q9UL15 447 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HS3ST4Q9Y661 456 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZFP37Q9Y6Q3 630 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ADAM12O43184 909 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ITM2AO43736 263 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SNAP91O60641 907 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TCEA3O75764 348 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BAIAP3O94812 1187 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 PIGNO95427 931 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 HLA-DQB2P05538 268 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GABRB2P47870 512 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 INPP1P49441 399 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FSTL4Q6MZW2 842 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SLC7A5P1Q8MH63 180 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 GAB3Q8WWW8 586 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NSMCE3Q96MG7 304 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF558Q96NG5 402 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CHID1Q9BWS9 393 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 STK39Q9UEW8 545 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 LINC00854A0A1B0GVQ3 168 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ENPP3O14638 875 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 NCAM2O15394 837 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 OXSR1O95747 527 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SERPINE1P05121 402 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF23P17027 643 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CD151P48509 253 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 SERPINH1P50454 418 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 KPNA1P52294 538 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 BNIP3Q12983 259 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 STX5Q13190 355 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZBTB6Q15916 424 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 ZNF423Q2M1K9 1284 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TBCELQ5QJ74 424 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IFNLR1Q8IU57 520 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EBF4Q9BQW3 602 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 TXLNGYQ9BZA5 131 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 VRTNQ9H8Y1 702 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 UBA2Q9UBT2 640 aaPredicted RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FBXO5Q9UKT4 447 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 EFR3BQ9Y2G0 817 aa10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 FCF1Q9Y324 198 aaKnown RBP10.75□□□□□ -0.69
MSH5-SAPCD1-207ENST00000493662 CDH15P55291 814 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms