RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 MTHFRP42898 656 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PMPCAQ10713 525 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 KRT24Q2M2I5 525 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 TTC31Q49AM3 519 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 ESCO2Q56NI9 601 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SGO1Q5FBB7 561 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 BTN2A1Q7KYR7 527 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MCEMP1Q8IX19 187 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 KLHL7Q8IXQ5 586 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 HACE1Q8IYU2 909 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 FBXO39Q8N4B4 442 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 NXNL1Q96CM4 212 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 CDT1Q9H211 546 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MLXIPLQ9NP71 852 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PAPOLBQ9NRJ5 636 aaKnown RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 COPG2Q9UBF2 871 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 UBA2Q9UBT2 640 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 DDX25Q9UHL0 483 aaKnown RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MAFFQ9ULX9 164 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 RAP2CQ9Y3L5 183 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MAST3O60307 1309 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 IGSF1Q8N6C5 1336 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 A0A0B4J293 547 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 A0A0U1RQF3 1178 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PLSCR1O15162 318 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 KLK8O60259 260 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 KINO60870 393 aaKnown RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 BMP5P22003 454 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 HOXA7P31268 230 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 GPR12P47775 334 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 ARSEP51690 589 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 GPR143P51810 404 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 TMPRSS3P57727 454 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 TUBB4BP68371 445 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MRPS34P82930 218 aaKnown RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MORF4L2Q15014 288 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MEP1BQ16820 701 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SOWAHAQ2M3V2 549 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 TYSND1Q2T9J0 566 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 C2orf76Q3KRA6 126 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 GLRA4Q5JXX5 417 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 OGFOD2Q6N063 350 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MSANTD1Q6ZTZ1 278 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 NUP54Q7Z3B4 507 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SPATA21Q7Z572 469 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SPATA19Q7Z5L4 167 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 CENPVQ7Z7K6 275 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 HOOK3Q86VS8 718 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MFN1Q8IWA4 741 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PALM2Q8IXS6 379 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF619Q8N2I2 560 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SLITRK1Q96PX8 696 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PCGF1Q9BSM1 259 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MLST8Q9BVC4 326 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 LHPPQ9H008 270 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 SLCO5A1Q9H2Y9 848 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 PIGMQ9H3S5 423 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 THAP9Q9H5L6 903 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 ZNF703Q9H7S9 590 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-212ENST00000493341 GPR108Q9NPR9 543 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 MTMR10Q9NXD2 777 aa4.72□□□□□ -1.65
VPS13A-212ENST00000493341 LRRD1A4D1F6 860 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 DPPA5A6NC42 116 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ENO4A6NNW6 628 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 UBE2Q2LH0YL09 131 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 H7C1Q1 480 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SLC22A3O75751 556 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 NEURL1O76050 574 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PLAUP00749 431 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PFKFB1P16118 471 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CASTP20810 708 aaKnown RBP4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SELENOPP49908 381 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PPP2R2BQ00005 443 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PPA1Q15181 289 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 C2orf68Q2NKX9 166 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PLEKHO1Q53GL0 409 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SOWAHCQ53LP3 525 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ALG10Q5BKT4 473 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ALG10BQ5I7T1 473 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 DHRS7BQ6IAN0 325 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CEP85Q6P2H3 762 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SERPINA11Q86U17 422 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 LDB1Q86U70 411 aaPredicted RBP4.71□□□□□ -1.66
VPS13A-212ENST00000493341 TSPAN33Q86UF1 283 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 TMC8Q8IU68 726 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ADGRF4Q8IZF3 695 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 LRRC57Q8N9N7 239 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 BEST2Q8NFU1 509 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CORO2AQ92828 525 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ATP6V0A1Q93050 837 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 CAVIN3Q969G5 261 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SLC41A2Q96JW4 573 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 PPP1R13BQ96KQ4 1090 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 FAM110AQ9BQ89 295 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 FSD1Q9BTV5 496 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 ZNF341Q9BYN7 854 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 EPB41L5Q9HCM4 733 aa4.71□□□□□ -1.66
VPS13A-212ENST00000493341 SLC2A4RGQ9NR83 387 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms