RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TTC30BQ8N4P2 665 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 PPHLN1Q8NEY8 458 aaKnown RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 BRSK1Q8TDC3 778 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 ANKZF1Q9H8Y5 726 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 GDF3Q9NR23 364 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 SAMD15Q9P1V8 674 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 NFU1Q9UMS0 254 aa17.19■□□□□ 0.34
LIME1-208ENST00000493265 ZFR2Q9UPR6 939 aaKnown RBP17.19■□□□□ 0.34
LIME1-208ENST00000493265 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 SDR42E2A6NKP2 422 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 C2orf81A6NN90 581 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 HRO43593 1189 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 CRTAMO95727 393 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 ETV3P41162 512 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 RPS21P63220 83 aaKnown RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 PTSQ03393 145 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 PDIA2Q13087 525 aaKnown RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 SGCGQ13326 291 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 MSLNQ13421 630 aaPredicted RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 NAA30Q147X3 362 aaPredicted RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 TAF1AQ15573 450 aaPredicted RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 CDKN3Q16667 212 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 CES3Q6UWW8 571 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 ARMCX6Q7L4S7 300 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 HORMAD1Q86X24 394 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 ANKMY2Q8IV38 441 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 GSPT2Q8IYD1 628 aaKnown RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 TMEFF1Q8IYR6 380 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 ZCCHC9Q8N567 271 aaKnown RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 EID2BQ96D98 161 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 LYSMD1Q96S90 227 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 SRPK1Q96SB4 655 aaKnown RBP17.18■□□□□ 0.34
LIME1-208ENST00000493265 MYOCQ99972 504 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 IL22Q9GZX6 179 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 KDM4CQ9H3R0 1056 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 TRABDQ9H4I3 376 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 CHRAC1Q9NRG0 131 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 SEMA4GQ9NTN9 838 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 ZDHHC18Q9NUE0 388 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 CD84Q9UIB8 345 aa17.18■□□□□ 0.34
LIME1-208ENST00000493265 EML5Q05BV3 1969 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 HEATR9A2RTY3 570 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 CCL22O00626 93 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 STX7O15400 261 aaKnown RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 SLC31A1O15431 190 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 LDB2O43679 373 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 TM7SF2O76062 418 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 ZNF30P17039 623 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 LPOP22079 712 aaPredicted RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 KCNA4P22459 653 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 ADRA1DP25100 572 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 STC1P52823 247 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 CUL1Q13616 776 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 SMAD1Q15797 465 aaKnown RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 PCID2Q5JVF3 399 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 ALS2CLQ60I27 953 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 KIAA0895LQ68EN5 471 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 KIAA1161Q6NSJ0 714 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 SLC36A4Q6YBV0 504 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 Q6ZVL8 140 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 CENPUQ71F23 418 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 CEP68Q76N32 757 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 TMC3Q7Z5M5 1100 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 AGGF1Q8N302 714 aaeCLIP17.17■□□□□ 0.34
LIME1-208ENST00000493265 OR4K2Q8NGD2 314 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 OR13C4Q8NGS5 318 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 NETO1Q8TDF5 533 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 GAB3Q8WWW8 586 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 TRIM56Q9BRZ2 755 aaKnown RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 FRMD8Q9BZ67 464 aaPredicted RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 SAYSD1Q9NPB0 183 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 FZD3Q9NPG1 666 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 PKD2L2Q9NZM6 624 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 MTRF1LQ9UGC7 380 aaKnown RBP17.17■□□□□ 0.34
LIME1-208ENST00000493265 CHMP2BQ9UQN3 213 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 PKP3Q9Y446 797 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 TCAF1Q9Y4C2 921 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 NUMA1Q14980 2115 aa17.17■□□□□ 0.34
LIME1-208ENST00000493265 MEI4A8MW99 385 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 PPFIA2O75334 1257 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 RECQL5O94762 991 aaPredicted RBP17.16■□□□□ 0.34
LIME1-208ENST00000493265 PAK4O96013 591 aaPredicted RBP17.16■□□□□ 0.34
LIME1-208ENST00000493265 CNR2P34972 360 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 ELK3P41970 407 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 MAGEA3P43357 314 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 ZNF284Q2VY69 593 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 PPM1JQ5JR12 505 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 NEK5Q6P3R8 708 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 PRR23CQ6ZRP0 262 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 MICALCLQ6ZW33 695 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 STAMBPL1Q96FJ0 436 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 CFAP36Q96G28 342 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 DNAJC1Q96KC8 554 aaKnown RBP17.16■□□□□ 0.34
LIME1-208ENST00000493265 SIGLEC10Q96LC7 697 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 COQ10AQ96MF6 247 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 ZNF778Q96MU6 729 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 SLC17A9Q9BYT1 436 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 SLC2A6Q9UGQ3 507 aa17.16■□□□□ 0.34
LIME1-208ENST00000493265 MAP1BP46821 2468 aaKnown RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms