RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-233	ENST00000489352	TFAP2B	Q92481	460 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	GDAP1L1	Q96MZ0	367 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	RUFY1	Q96T51	708 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	BLZF1	Q9H2G9	400 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	WDCP	Q9H6R7	721 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	PDE7B	Q9NP56	450 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	PHPT1	Q9NRX4	125 aa	Predicted RBP	11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	SUFU	Q9UMX1	484 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	ACTL7A	Q9Y615	435 aa		11.49	□□□□□ -0.57
HDAC6-233	ENST00000489352	PVALEF	A0A1B0GWK0	134 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	SRGAP2	O75044	1071 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	RASSF9	O75901	435 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	IGSF6	O95976	241 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	ANKRD34C	P0C6C1	535 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	MYCLP1	P12525	358 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	TBXAS1	P24557	533 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	BRD2	P25440	801 aa	Known RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	PSMC2	P35998	433 aa	Known RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	TRIM23	P36406	574 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	ETFB	P38117	255 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	SH3BP2	P78314	561 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	LLGL1	Q15334	1064 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	DEFB106A	Q8N104	65 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	GRHL3	Q8TE85	626 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	RELT	Q969Z4	430 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	TRAPPC9	Q96Q05	1148 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	EPB41L1	Q9H4G0	881 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	PCDH12	Q9NPG4	1184 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	ZNHIT2	Q9UHR6	403 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	SNX7	Q9UNH6	387 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	PCDHB4	Q9Y5E5	795 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	PCDHGA10	Q9Y5H3	936 aa		11.48	□□□□□ -0.57
HDAC6-233	ENST00000489352	GOLGA6L3	A6NEY3	463 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	DRGX	A6NNA5	263 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	FANCG	O15287	622 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	BUB1B	O60566	1050 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	RECQL5	O94762	991 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	IPO13	O94829	963 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	ELFN1	P0C7U0	828 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	FGF5	P12034	268 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	NR2F2	P24468	414 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	ADCY8	P40145	1251 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	VAV2	P52735	878 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	EPHA4	P54764	986 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	ENPEP	Q07075	957 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	UGP2	Q16851	508 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	CRB2	Q5IJ48	1285 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	PNCK	Q6P2M8	343 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	RPTN	Q6XPR3	784 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	CXXC5	Q7LFL8	322 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	ZNF354C	Q86Y25	554 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	DRC7	Q8IY82	874 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	SLC37A2	Q8TED4	501 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	FAR1	Q8WVX9	515 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	ARHGEF2	Q92974	986 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	TKTL2	Q9H0I9	626 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	KCTD10	Q9H3F6	313 aa		11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	FLNA	P21333	2647 aa	Known RBP	11.47	□□□□□ -0.57
HDAC6-233	ENST00000489352	PRRC2A	P48634	2157 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	CXorf51A	A0A1B0GTR3	108 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	PPP1R3G	B7ZBB8	358 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	CCL21	O00585	134 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	CEACAM5	P06731	702 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	RPL13	P26373	211 aa	Known RBP	11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	CASP1	P29466	404 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	LRMP	Q12912	555 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	TAF5	Q15542	800 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	ANO6	Q4KMQ2	910 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	XKRX	Q6PP77	449 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	IGFL3	Q6UXB1	125 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	LEKR1	Q6ZMV7	388 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	CUZD1	Q86UP6	607 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	SFRP1	Q8N474	314 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	MR1	Q95460	341 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	C9orf72	Q96LT7	481 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	TTYH3	Q9C0H2	523 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	EXOC1	Q9NV70	894 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	SERTAD1	Q9UHV2	236 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	PLEKHM1	Q9Y4G2	1056 aa		11.46	□□□□□ -0.57
HDAC6-233	ENST00000489352	STAB1	Q9NY15	2570 aa		11.46	□□□□□ -0.58
HDAC6-233	ENST00000489352	ABCA4	P78363	2273 aa		11.46	□□□□□ -0.58
HDAC6-233	ENST00000489352	CACNA1C	Q13936	2221 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	NSD1	Q96L73	2696 aa	Predicted RBP	11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	TRGV8	A0A0C4DH27	118 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	GOLGA6C	A6NDK9	693 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	GOLGA6B	A6NDN3	693 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352		E5RJQ4	531 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	TOX3	O15405	576 aa	Predicted RBP	11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	JRK	O75564	520 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	CD160	O95971	181 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	GOLGA6D	P0CG33	693 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	NASP	P49321	788 aa	Predicted RBP	11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	RHOA	P61586	193 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	ACOX1	Q15067	660 aa		11.45	□□□□□ -0.58
HDAC6-233	ENST00000489352	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms