RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CCKBRP32239 447 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 PBX1P40424 430 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 MAZP56270 477 aaKnown RBP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 ZBED6P86452 979 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CDK3Q00526 305 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CFHR1Q03591 330 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 ILF3Q12906 894 aaKnown RBP eCLIP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CLN3Q13286 438 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 BIRC2Q13490 618 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 HLTFQ14527 1009 aaKnown RBP eCLIP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 HADHQ16836 314 aaKnown RBP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 RALGPS1Q5JS13 557 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CCDC122Q5T0U0 273 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 PCSK4Q6UW60 755 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CCDC81Q6ZN84 652 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 TEX101Q9BY14 249 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 GSDMCQ9BYG8 508 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 SPATS2LQ9NUQ6 558 aaKnown RBP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 CD84Q9UIB8 345 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 APPL1Q9UKG1 709 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 LUC7L2Q9Y383 392 aaKnown RBP15.23■□□□□ 0.03
LIMS3-203ENST00000480744 LOXL2Q9Y4K0 774 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 TTLL3Q9Y4R7 772 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 KALRNO60229 2985 aa15.23■□□□□ 0.03
LIMS3-203ENST00000480744 RHPN2P1A8MT19 583 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 GOLGA6L19H0YKK7 550 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 PSMD11O00231 422 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 MAP3K6O95382 1288 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 PDHA1P08559 390 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 KRT10P13645 584 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 CCNB1P14635 433 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 PNLIPP16233 465 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 AK4P27144 223 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 GPR1P46091 355 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 POLD2P49005 469 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 EPHB1P54762 984 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 SKOR2Q2VWA4 1001 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 AMZ1Q400G9 498 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 MAP9Q49MG5 647 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 PHF19Q5T6S3 580 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 KIAA1614Q5VZ46 1190 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 ALKBH5Q6P6C2 394 aaKnown RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 SLC30A9Q6PML9 568 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 NDUFAF2Q8N183 169 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 ZNF843Q8N446 348 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 ZNF564Q8TBZ8 553 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 GPBAR1Q8TDU6 330 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 ZDHHC1Q8WTX9 485 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 PTCD2Q8WV60 388 aaKnown RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 SCRN2Q96FV2 425 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 SMIM14Q96QK8 99 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 MCCC1Q96RQ3 725 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 FRMD8Q9BZ67 464 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 POLR1EQ9GZS1 481 aaKnown RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 TAAR2Q9P1P5 351 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 RCOR3Q9P2K3 495 aaPredicted RBP15.22■□□□□ 0.03
LIMS3-203ENST00000480744 CAPN11Q9UMQ6 739 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 SUFUQ9UMX1 484 aa15.22■□□□□ 0.03
LIMS3-203ENST00000480744 ATMQ13315 3056 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 NUDT21O43809 227 aaKnown RBP15.21■□□□□ 0.03
LIMS3-203ENST00000480744 FUCA1P04066 466 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 ITIH1P19827 911 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 IL4RP24394 825 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 ALDH4A1P30038 563 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 DSC2Q02487 901 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 DPYSL3Q14195 570 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 ATP13A4Q4VNC1 1196 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 ZFYVE27Q5T4F4 411 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 LRRC66Q68CR7 880 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 RFLNAQ6ZTI6 216 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 NRROSQ86YC3 692 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 CPNE8Q86YQ8 564 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 TEX26Q8N6G2 289 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 KCTD6Q8NC69 237 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 PIH1D2Q8WWB5 315 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 AP2M1Q96CW1 435 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 IFNKQ9P0W0 207 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 CTTNBP2NLQ9P2B4 639 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 PCDHGA7Q9Y5G6 932 aa15.21■□□□□ 0.03
LIMS3-203ENST00000480744 AHCTF1Q8WYP5 2266 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 K7ENP7 123 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 ECEL1O95672 775 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 FGF1P05230 155 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 GARSP41250 739 aaKnown RBP15.2■□□□□ 0.02
LIMS3-203ENST00000480744 MAPK10P53779 464 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 OR1D5P58170 312 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 CTBSQ01459 385 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 GALNT2Q10471 571 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 LY6DQ14210 128 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 NCBP2-AS2Q69YL0 99 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 TIGD7Q6NT04 549 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-203ENST00000480744 INO80CQ6PI98 192 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-203ENST00000480744 TMPRSS9Q7Z410 1059 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 TECPR1Q7Z6L1 1165 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 ZNF605Q86T29 641 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 TRIM74Q86UV6 250 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 LRRC49Q8IUZ0 686 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 CBARPQ8N350 705 aaPredicted RBP15.2■□□□□ 0.02
LIMS3-203ENST00000480744 LRRN4Q8WUT4 740 aa15.2■□□□□ 0.02
LIMS3-203ENST00000480744 PATE1Q8WXA2 126 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms