RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	PRR5-ARHGAP8	B1AHC4	643 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520		E7ESA3	106 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	POC1B-GALNT4	F8VUJ3	575 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SLCO1B7	G3V0H7	640 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PI4K2B	G5E9Z4	385 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	WNT10B	O00744	389 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	COPE	O14579	308 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ANGPT2	O15123	496 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ARHGEF9	O43307	516 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PSTPIP1	O43586	416 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SH3BP5	O60239	455 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	B4GALT4	O60513	344 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	MRPS14	O60783	128 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NDUFS2	O75306	463 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	H2AFY	O75367	372 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	RFPL2	O75678	378 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SNX4	O95219	450 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCNE2	O96020	404 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	APOA1	P02647	267 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TP53	P04637	393 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SNRPA	P09012	282 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CETP	P11597	493 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FCGR1A	P12314	374 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	STMN1	P16949	149 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PTPN1	P18031	435 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ABCB4	P21439	1286 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	COMT	P21964	271 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	BDNF	P23560	247 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ADRA1D	P25100	572 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	GCA	P28676	217 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	RBL1	P28749	1068 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CHKA	P35790	457 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TUFM	P49411	452 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	HLCS	P50747	726 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NDST2	P52849	883 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPP5C	P53041	499 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRKAA2	P54646	552 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CYP4F2	P78329	520 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	MRPS9	P82933	396 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ARHGAP8	P85298	464 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TMPRSS15	P98073	1019 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	MPP1	Q00013	466 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	POU4F1	Q01851	419 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	GHRHR	Q02643	423 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PPARD	Q03181	441 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CYP4F3	Q08477	520 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FLOT2	Q14254	428 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	STIL	Q15468	1287 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	DGUOK	Q16854	277 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	KNOP1	Q1ED39	458 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	BMT2	Q1RMZ1	405 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	LETM2	Q2VYF4	491 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TMEM119	Q4V9L6	283 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCDC58	Q4VC31	144 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ESCO2	Q56NI9	601 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FCRLB	Q6BAA4	426 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	APOBEC3H	Q6NTF7	200 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CDC42EP5	Q6NZY7	148 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	METTL2B	Q6P1Q9	378 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ABRAXAS1	Q6UWZ7	409 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NIPA1	Q7RTP0	329 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	KCTD20	Q7Z5Y7	419 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	GALNT7	Q86SF2	657 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NEK8	Q86SG6	692 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TTC7B	Q86TV6	843 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM83A	Q86UY5	434 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CPNE8	Q86YQ8	564 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NUDCD3	Q8IVD9	361 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CCDC60	Q8IWA6	550 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PGAM4	Q8N0Y7	254 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PARP8	Q8N3A8	854 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZCCHC7	Q8N3Z6	543 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SFRP1	Q8N474	314 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FAM109A	Q8N4B1	249 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	DCLK2	Q8N568	766 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NATD1	Q8N6N6	113 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	LINC00469	Q8N7U9	141 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ANKFN1	Q8N957	763 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TDRD5	Q8NAT2	981 aa	Known RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	LNX1	Q8TBB1	728 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SEPT1	Q8WYJ6	367 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TFAP2C	Q92754	450 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	NCLN	Q969V3	563 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZUFSP	Q96AP4	578 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	LCOR	Q96JN0	433 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	FEM1C	Q96JP0	617 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CNDP1	Q96KN2	507 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	BTN2A3P	Q96KV6	586 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CEP170P1	Q96L14	293 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	PRMT6	Q96LA8	375 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF560	Q96MR9	790 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	ZNF578	Q96N58	590 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	AGPAT1	Q99943	283 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	CNPY3	Q9BT09	278 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	MYL10	Q9BUA6	226 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	C9orf16	Q9BUW7	83 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	TP63	Q9H3D4	680 aa	Predicted RBP	4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	SNX25	Q9H3E2	840 aa		4.73	□□□□□ -1.65
PTCD3-212	ENST00000477520	KCTD10	Q9H3F6	313 aa		4.73	□□□□□ -1.65

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