RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CHKBQ9Y259 395 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 HYOU1Q9Y4L1 999 aa14.09□□□□□ -0.15
UPF3A-204ENST00000475218 KCNK1O00180 336 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 TCEA3O75764 348 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 POLD2P49005 469 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 CCL7P80098 99 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 PPIDQ08752 370 aaKnown RBP14.08□□□□□ -0.16
UPF3A-204ENST00000475218 ITKQ08881 620 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 TCEAL1Q15170 157 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 TIGD7Q6NT04 549 aaPredicted RBP14.08□□□□□ -0.16
UPF3A-204ENST00000475218 NPNTQ6UXI9 565 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 RBM44Q6ZP01 1051 aaKnown RBP14.08□□□□□ -0.16
UPF3A-204ENST00000475218 USP45Q70EL2 814 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 MAP7D3Q8IWC1 876 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 ATL2Q8NHH9 583 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 TPCN2Q8NHX9 752 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 GPBAR1Q8TDU6 330 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 SCAMP4Q969E2 229 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 WDR24Q96S15 920 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 ABCG8Q9H221 673 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 PRORYQ9H606 182 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 SPATS2LQ9NUQ6 558 aaKnown RBP14.08□□□□□ -0.16
UPF3A-204ENST00000475218 AMACRQ9UHK6 382 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 CD84Q9UIB8 345 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 DOLKQ9UPQ8 538 aa14.08□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF487B1APH4 448 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 CYP2A6P11509 494 aaPredicted RBP14.07□□□□□ -0.16
UPF3A-204ENST00000475218 TEAD1P28347 426 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 ABCG1P45844 678 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 STC1P52823 247 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 SKOR1P84550 965 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 TLE3Q04726 772 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 HLTFQ14527 1009 aaKnown RBP eCLIP14.07□□□□□ -0.16
UPF3A-204ENST00000475218 C3orf38Q5JPI3 329 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 CERCAMQ5T4B2 595 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 IGF2-ASQ6U949 168 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 C17orf82Q86X59 251 aaPredicted RBP14.07□□□□□ -0.16
UPF3A-204ENST00000475218 SPACA3Q8IXA5 215 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 TC2NQ8N9U0 490 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 FAM46DQ8NEK8 389 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 CCDC42Q96M95 316 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 OLFM3Q96PB7 478 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 LCMT1Q9UIC8 334 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 SLC17A4Q9Y2C5 497 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 PCYT1BQ9Y5K3 369 aaPredicted RBP14.07□□□□□ -0.16
UPF3A-204ENST00000475218 RNF215Q9Y6U7 377 aa14.07□□□□□ -0.16
UPF3A-204ENST00000475218 SCN8AQ9UQD0 1980 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 LRRD1A4D1F6 860 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CAPN8A6NHC0 703 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 JCHAINP01591 159 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 KELP23276 732 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ACTN2P35609 894 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ARHGAP25P42331 645 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 IFI35P80217 286 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CCDC173Q0VFZ6 552 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 B4GALNT4Q76KP1 1039 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TMPRSS9Q7Z410 1059 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TAF8Q7Z7C8 310 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TRIM74Q86UV6 250 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CCDC13Q8IYE1 715 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SCG3Q8WXD2 468 aaKnown RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 EID2BQ96D98 161 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SCARF2Q96GP6 870 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CEP41Q9BYV8 373 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 BRD8Q9H0E9 1235 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CARS2Q9HA77 564 aaKnown RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 PHPT1Q9NRX4 125 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ZNHIT6Q9NWK9 470 aaKnown RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SUFUQ9UMX1 484 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TFR2Q9UP52 801 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 PLEKHM1Q9Y4G2 1056 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ATRXP46100 2492 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 D6RAR5 112 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 FGF1P05230 155 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 MX2P20592 715 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 AK4P27144 223 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ARHGEF7Q14155 803 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TAZQ16635 292 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 QPCTQ16769 361 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 C14orf28Q4W4Y0 310 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 LRRC38Q5VT99 294 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 RAET1GQ6H3X3 334 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SARM1Q6SZW1 724 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 VSIG1Q86XK7 387 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 RHOT2Q8IXI1 618 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CCNYQ8ND76 341 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TADA1Q96BN2 335 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 ZNF578Q96N58 590 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SLC46A1Q96NT5 459 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 LYSMD1Q96S90 227 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 GOLPH3Q9H4A6 298 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 SUDS3Q9H7L9 328 aaPredicted RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 PCDH9Q9HC56 1237 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 APPL1Q9UKG1 709 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CNOT6Q9ULM6 557 aaKnown RBP14.06□□□□□ -0.16
UPF3A-204ENST00000475218 TTLL3Q9Y4R7 772 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 PCDHGA8Q9Y5G5 932 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 HEY1Q9Y5J3 304 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 UNC13CQ8NB66 2214 aa14.06□□□□□ -0.16
UPF3A-204ENST00000475218 CFAP46Q8IYW2 2715 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms