RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MCTP1Q6DN14 999 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 GDPD4Q6W3E5 623 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 MEX3BQ6ZN04 569 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 NRROSQ86YC3 692 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 SLC9A9Q8IVB4 645 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 SFRP1Q8N474 314 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ANKRD20A12PQ8NF67 263 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 PLEKHO2Q8TD55 490 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ELMO3Q96BJ8 720 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 C9orf72Q96LT7 481 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 TREX2Q9BQ50 279 aaPredicted RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 TM6SF2Q9BZW4 377 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 TNMDQ9H2S6 317 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 FAM204AQ9H8W3 233 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 APOBEC3GQ9HC16 384 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 ATP13A1Q9HD20 1204 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 TNFRSF10DQ9UBN6 386 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 KLHL3Q9UH77 587 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 RARRES3Q9UL19 164 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ANKRD36A6QL64 1941 aa8□□□□□ -1.13
USP54-211ENST00000474929 LILRA5A6NI73 299 aa8□□□□□ -1.13
USP54-211ENST00000474929 PCDH17O14917 1159 aa8□□□□□ -1.13
USP54-211ENST00000474929 PMPCBO75439 489 aa8□□□□□ -1.13
USP54-211ENST00000474929 ZNF821O75541 412 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 CD2BP2O95400 341 aaKnown RBP8□□□□□ -1.13
USP54-211ENST00000474929 C9P02748 559 aa8□□□□□ -1.13
USP54-211ENST00000474929 KLK3P07288 261 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 INHBBP09529 407 aa8□□□□□ -1.13
USP54-211ENST00000474929 CD19P15391 556 aa8□□□□□ -1.13
USP54-211ENST00000474929 OR1E1P30953 314 aa8□□□□□ -1.13
USP54-211ENST00000474929 ACADSBP45954 432 aa8□□□□□ -1.13
USP54-211ENST00000474929 ZNF169Q14929 603 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 KNOP1Q1ED39 458 aaKnown RBP8□□□□□ -1.13
USP54-211ENST00000474929 ANO6Q4KMQ2 910 aa8□□□□□ -1.13
USP54-211ENST00000474929 CFAP58Q5T655 872 aa8□□□□□ -1.13
USP54-211ENST00000474929 TMEM198Q66K66 360 aa8□□□□□ -1.13
USP54-211ENST00000474929 RPUSD3Q6P087 351 aaKnown RBP8□□□□□ -1.13
USP54-211ENST00000474929 LCLAT1Q6UWP7 414 aa8□□□□□ -1.13
USP54-211ENST00000474929 TMEM207Q6UWW9 146 aa8□□□□□ -1.13
USP54-211ENST00000474929 LRRC31Q6UY01 552 aa8□□□□□ -1.13
USP54-211ENST00000474929 SLC9B2Q86UD5 537 aa8□□□□□ -1.13
USP54-211ENST00000474929 SKAP1Q86WV1 359 aa8□□□□□ -1.13
USP54-211ENST00000474929 NELFCDQ8IXH7 590 aa8□□□□□ -1.13
USP54-211ENST00000474929 CBARPQ8N350 705 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 GALNT16Q8N428 558 aa8□□□□□ -1.13
USP54-211ENST00000474929 ACBD4Q8NC06 268 aa8□□□□□ -1.13
USP54-211ENST00000474929 SLC37A2Q8TED4 501 aa8□□□□□ -1.13
USP54-211ENST00000474929 PATE1Q8WXA2 126 aa8□□□□□ -1.13
USP54-211ENST00000474929 GDAP1L1Q96MZ0 367 aa8□□□□□ -1.13
USP54-211ENST00000474929 ZSCAN16Q9H4T2 348 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 GPAMQ9HCL2 828 aa8□□□□□ -1.13
USP54-211ENST00000474929 WASH6PQ9NQA3 447 aa8□□□□□ -1.13
USP54-211ENST00000474929 PADI2Q9Y2J8 665 aa8□□□□□ -1.13
USP54-211ENST00000474929 FRMD4BQ9Y2L6 1034 aa8□□□□□ -1.13
USP54-211ENST00000474929 COQ6Q9Y2Z9 468 aa8□□□□□ -1.13
USP54-211ENST00000474929 FCF1Q9Y324 198 aaKnown RBP8□□□□□ -1.13
USP54-211ENST00000474929 MAP1AP78559 2803 aaPredicted RBP8□□□□□ -1.13
USP54-211ENST00000474929 O00370 1275 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 MAPK13O15264 365 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CREB3O43889 395 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 IGSF6O95976 241 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 FYNP06241 537 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 IVLP07476 585 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 ESRRAP11474 423 aaPredicted RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 HNRNPH3P31942 346 aaKnown RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 HOXD13P35453 343 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 GNPDA1P46926 289 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CSNK1G2P78368 415 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CDK17Q00537 523 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CTBSQ01459 385 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 ACY1Q03154 408 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 Q0VFX4 171 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 RAPSNQ13702 412 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 TLR1Q15399 786 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CES4AQ5XG92 561 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 KCTD16Q68DU8 428 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 FAAH2Q6GMR7 532 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 GFRALQ6UXV0 394 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 INTS8Q75QN2 995 aaKnown RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 PRSS42Q7Z5A4 293 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CAMKMTQ7Z624 323 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 TECPR1Q7Z6L1 1165 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 EID3Q8N140 333 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 SLC35F5Q8WV83 523 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 ARHGEF2Q92974 986 aaKnown RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 HMCESQ96FZ2 354 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 LRFN5Q96NI6 719 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 MED15Q96RN5 788 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 HERPUD2Q9BSE4 406 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 EPS8L2Q9H6S3 715 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 CCM2LQ9NUG4 571 aaPredicted RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 DDIT4Q9NX09 232 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 STMN3Q9NZ72 180 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 TCFL5Q9UL49 500 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 HPCAL4Q9UM19 191 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 SRPRBQ9Y5M8 271 aaKnown RBP7.99□□□□□ -1.13
USP54-211ENST00000474929 SLC30A1Q9Y6M5 507 aa7.99□□□□□ -1.13
USP54-211ENST00000474929 MXRA5Q9NR99 2828 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 KIR2DS5A0A0G2JLQ3 304 aa7.98□□□□□ -1.13
USP54-211ENST00000474929 A0A0G2JNG1 304 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms