RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PITPNM1O00562 1244 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 BET1O15155 118 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PRKD3O94806 890 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 EPOP01588 193 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PRIM2P49643 509 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PPP5CP53041 499 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CYP2A13Q16696 494 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 INAVAQ3KP66 663 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CDH24Q86UP0 819 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C10orf107Q8IVU9 208 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FAM47BQ8NA70 645 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ACVR1CQ8NER5 493 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 AGR3Q8TD06 166 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 WBP1Q96G27 269 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SDHCQ99643 169 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 WDR12Q9GZL7 423 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CDT1Q9H211 546 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 KIF17Q9P2E2 1029 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 AP3M1Q9Y2T2 418 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 KLK4Q9Y5K2 254 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 A0A1B0GTQ1 180 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SPTLC1O15269 473 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DAB1O75553 588 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TSPAN12O95859 305 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PRPH2P23942 346 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 STT3AP46977 705 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PRKCDQ05655 676 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 MTMR1Q13613 665 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TBCEQ15813 527 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CDR2LQ86X02 465 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SLC26A7Q8TE54 656 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 S100ZQ8WXG8 99 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 VPS39Q96JC1 886 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF583Q96ND8 569 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PHF12Q96QT6 1004 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 EBF1Q9UH73 591 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GMEB2Q9UKD1 530 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 A0A096LPK6 155 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CXorf51AA0A1B0GTR3 108 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 NRP2O60462 931 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ALDH3A2P51648 485 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ARSFP54793 590 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ADAM17P78536 824 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 EMX2Q04743 252 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 HSPA14Q0VDF9 509 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 AADATQ8N5Z0 425 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C17orf50Q8WW18 174 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 AMBRA1Q9C0C7 1298 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SARS2Q9NP81 518 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ZNF275Q9NSD4 429 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TBC1D13Q9NVG8 400 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ERVK-11Q9UQG0 969 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 HEY1Q9Y5J3 304 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DNAJC15Q9Y5T4 150 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 HEATR9A2RTY3 570 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PFDN1O60925 122 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 EEDO75530 441 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C22orf31O95567 290 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 IMPDH1P20839 514 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TKTP29401 623 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TSPY1Q01534 308 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ORC1Q13415 861 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DUSP7Q16829 419 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SEL1L3Q68CR1 1132 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 KCNT2Q6UVM3 1135 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SEZ6L2Q6UXD5 910 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ADAMTSL2Q86TH1 951 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CCDC190Q86UF4 302 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CARNMT1Q8N4J0 409 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TEX26Q8N6G2 289 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C2CD4AQ8NCU7 369 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GIPC3Q8TF64 312 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 CANT1Q8WVQ1 401 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 MARK4Q96L34 752 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FCRL3Q96P31 734 aaPredicted RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C1orf50Q9BV19 199 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TNFRSF12AQ9NP84 129 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DNAJC25-GNG10A0A024R161 153 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 A0A1W2PP18 115 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ANKRD61A6NGH8 418 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 EIF2AK2P19525 551 aaKnown RBP5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ACADSBP45954 432 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TAF5Q15542 800 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 BRMS1LQ5PSV4 323 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GPR107Q5VW38 600 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 LETMD1Q6P1Q0 360 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 DLEU7Q6UYE1 221 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 MSANTD1Q6ZTZ1 278 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 LPCAT2Q7L5N7 544 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 ANKMY2Q8IV38 441 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 FAM109AQ8N4B1 249 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SIMC1Q8NDZ2 872 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 P2RY11Q96G91 374 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 PPP1R2P1Q96PQ5 205 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SLC30A3Q99726 388 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 C2orf40Q9H1Z8 148 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 TPK1Q9H3S4 243 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 SLC28A3Q9HAS3 691 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 RAB6BQ9NRW1 208 aa5.35□□□□□ -1.55
SYNE1-220ENST00000471834 GTSE1Q9NYZ3 720 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms