RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 E7EVH7 732 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 CCDC188H7C350 402 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 KIF2AO00139 706 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 AURKAO14965 403 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 SUN1O94901 812 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 GAS8O95995 478 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 PCCBP05166 539 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 HMGCLP35914 325 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 LMAN1P49257 510 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 YPEL5P62699 121 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 DPTQ07507 201 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 MSLNQ13421 630 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 MTM1Q13496 603 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 TRIP13Q15645 432 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 KCTD19Q17RG1 926 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 HLA-BQ31612 363 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 ESRP1Q6NXG1 681 aaKnown RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 PNCKQ6P2M8 343 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 KDM7AQ6ZMT4 941 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 ZNF765Q7L2R6 523 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 PTAR1Q7Z6K3 402 aaPredicted RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 LINC00523Q86TU6 105 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 SPATS2Q86XZ4 545 aaKnown RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 DCP2Q8IU60 420 aaKnown RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 PLA2G15Q8NCC3 412 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 BLOC1S5Q8TDH9 187 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 RUNDC3BQ96NL0 473 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 DCBLD2Q96PD2 775 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 EDEM2Q9BV94 578 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 GTPBP2Q9BX10 602 aaKnown RBP11.93□□□□□ -0.5
VPS13D-204ENST00000469054 ABCG8Q9H221 673 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 ERVMER34-1Q9H9K5 563 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 GDF3Q9NR23 364 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 GPR27Q9NS67 375 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 PCYOX1Q9UHG3 505 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 CD84Q9UIB8 345 aa11.93□□□□□ -0.5
VPS13D-204ENST00000469054 EP300Q09472 2414 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 ZFHX2Q9C0A1 2572 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 CDX4O14627 284 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 GDF9O60383 454 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 ECEL1O95672 775 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 CER1O95813 267 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 APRTP07741 180 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 TSHRP16473 764 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 TRIM23P36406 574 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 VPS41P49754 854 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 BASP1P80723 227 aaKnown RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 GPS1Q13098 491 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 PDE1CQ14123 709 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 GLT6D1Q7Z4J2 308 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 KLHL7Q8IXQ5 586 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 SLC22A18ASQ8N1D0 253 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 PELI3Q8N2H9 469 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 TTC30BQ8N4P2 665 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 MINDY1Q8N5J2 469 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 BRSK1Q8TDC3 778 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 SLCO2A1Q92959 643 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 SCAMP4Q969E2 229 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 AP2M1Q96CW1 435 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 APOOQ9BUR5 198 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 CDH19Q9H159 772 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 FAM83DQ9H4H8 585 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 GAREM1Q9H706 876 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 EIF2B3Q9NR50 452 aaKnown RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 RAD18Q9NS91 495 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 OR1A2Q9Y585 309 aa11.92□□□□□ -0.5
VPS13D-204ENST00000469054 PTPRZ1P23471 2315 aaPredicted RBP11.92□□□□□ -0.5
VPS13D-204ENST00000469054 TRPM6Q9BX84 2022 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 RIF1Q5UIP0 2472 aaKnown RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 SPTY2D1-AS1A0A0U1RR47 76 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 C2orf81A6NN90 581 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 K7ESM1 405 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 DFNA5O60443 496 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 URI1O94763 535 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 SLC4A1P02730 911 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 PYGLP06737 847 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 HOXC4P09017 264 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TPH1P17752 444 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TEAD1P28347 426 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 GRIA1P42261 906 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 GPR1P46091 355 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 THOP1P52888 689 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 ARHGAP8P85298 464 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 CDH17Q12864 832 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 PTK2BQ14289 1009 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 PPP1R7Q15435 360 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TAF1AQ15573 450 aaPredicted RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 ZNF423Q2M1K9 1284 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 PRAMEF14Q5SWL7 426 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 TPRG1LQ5T0D9 272 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 HENMT1Q5T8I9 393 aaKnown RBP11.91□□□□□ -0.5
VPS13D-204ENST00000469054 RAET1GQ6H3X3 334 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 PPP1R21Q6ZMI0 780 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 OXR1Q8N573 874 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 DNAAF3Q8N9W5 541 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 GPR26Q8NDV2 337 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 SPATA4Q8NEY3 305 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 OR52K1Q8NGK4 314 aa11.91□□□□□ -0.5
VPS13D-204ENST00000469054 OR2I1PQ8NGU4 316 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms