RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PIH1D2Q8WWB5 315 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 MAML1Q92585 1016 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 TMEM74Q96NL1 305 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 SEMA3CQ99985 751 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 FRMD8Q9BZ67 464 aaPredicted RBP16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 DPEP2Q9H4A9 486 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 CARS2Q9HA77 564 aaKnown RBP16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 CPNE5Q9HCH3 593 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 IFNKQ9P0W0 207 aa16.56■□□□□ 0.24
CCDC28B-204ENST00000469003 NUDT21O43809 227 aaKnown RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 FZD6O60353 706 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 CEACAM5P06731 702 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 KRT10P13645 584 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 CCNB1P14635 433 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 CTPS1P17812 591 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 ATP13A4Q4VNC1 1196 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 NCBP2-AS2Q69YL0 99 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 ALG1LQ6GMV1 187 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 TIGD7Q6NT04 549 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 Q6ZVL8 140 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 RAB11FIP2Q7L804 512 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 SPRED1Q7Z699 444 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 TECPR1Q7Z6L1 1165 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 SFTPA2Q8IWL1 248 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 NDUFAF2Q8N183 169 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 FBXO39Q8N4B4 442 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 Q8N9G6 341 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF670Q9BS34 389 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 GSDMCQ9BYG8 508 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 FOXP3Q9BZS1 431 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 POLR1EQ9GZS1 481 aaKnown RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 TRNAU1APQ9NX07 287 aaKnown RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 LRIT1Q9P2V4 623 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 UVRAGQ9P2Y5 699 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 RNF215Q9Y6U7 377 aa16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 ARHGEF17Q96PE2 2063 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-204ENST00000469003 GOLGA6CA6NDK9 693 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 GOLGA6BA6NDN3 693 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 ERVH48-1M5A8F1 160 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 MATN3O15232 486 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 PROSCO94903 275 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 FUCA1P04066 466 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 PDHA1P08559 390 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 GOLGA6DP0CG33 693 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 CES1P23141 567 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 CCNCP24863 283 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 HNRNPH3P31942 346 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 CASP14P31944 242 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 UGT1A5P35504 534 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 GJC1P36383 396 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 RHDQ02161 417 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 DPTQ07507 201 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 ITKQ08881 620 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 ILF3Q12906 894 aaKnown RBP eCLIP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 PDK2Q15119 407 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 PTPRRQ15256 657 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 IFI16Q16666 785 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 ANKRD20A8PQ5CZ79 823 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 ARHGAP40Q5TG30 622 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 RAET1GQ6H3X3 334 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 NRROSQ86YC3 692 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 CPNE8Q86YQ8 564 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 KCTD6Q8NC69 237 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 SNRNP27Q8WVK2 155 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 FATE1Q969F0 183 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 TSGA13Q96PP4 275 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 SUDS3Q9H7L9 328 aaPredicted RBP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 SPATS2LQ9NUQ6 558 aaKnown RBP16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 GOLGA6AQ9NYA3 693 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 CTTNBP2NLQ9P2B4 639 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 AMACRQ9UHK6 382 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 LCMT1Q9UIC8 334 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 SUFUQ9UMX1 484 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 PCDHGA7Q9Y5G6 932 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.54■□□□□ 0.245e-7■■■□□ 15.5
CCDC28B-204ENST00000469003 SCN8AQ9UQD0 1980 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 UNC13CQ8NB66 2214 aa16.54■□□□□ 0.24
CCDC28B-204ENST00000469003 IVLP07476 585 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 H2AFZP0C0S5 128 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 ZNF30P17039 623 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 GNPDA1P46926 289 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 TAS2R40P59535 323 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 ZFP36L1Q07352 338 aaKnown RBP16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 VAC14Q08AM6 782 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 LRRC66Q68CR7 880 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 PCSK4Q6UW60 755 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 H2AFVQ71UI9 128 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 C17orf82Q86X59 251 aaPredicted RBP16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 MAP7D3Q8IWC1 876 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 ZDHHC1Q8WTX9 485 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 FAF2Q96CS3 445 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 ABCG8Q9H221 673 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 HAUS2Q9NVX0 235 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 RBM22Q9NW64 420 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 TAAR2Q9P1P5 351 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 ATXN7L1Q9ULK2 861 aaPredicted RBP16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 SLC17A4Q9Y2C5 497 aa16.53■□□□□ 0.24
CCDC28B-204ENST00000469003 A0A0J9YYE9 177 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 MAP3K6O95382 1288 aa16.52■□□□□ 0.24
CCDC28B-204ENST00000469003 TRBC1P01850 177 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms