RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 FRMD8Q9BZ67 464 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-207ENST00000467819 PCDH18Q9HCL0 1135 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 SUFUQ9UMX1 484 aa21.05■□□□□ 0.96
COL9A3-207ENST00000467819 PRAMEF33A0A0G2JMD5 474 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 A0A0U1RQS6 177 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 EFSO43281 561 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 PRAMEF10O60809 474 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 FUCA1P04066 466 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 KRT10P13645 584 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 CTPS1P17812 591 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 AK4P27144 223 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-207ENST00000467819 SERPINB6P35237 376 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 ZNF165P49910 485 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 CDK3Q00526 305 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 PIGHQ14442 188 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-207ENST00000467819 AMZ1Q400G9 498 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 MARC1Q5VT66 337 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 Q6ZVL8 140 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 SLITRK4Q8IW52 837 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 PTCD2Q8WV60 388 aaKnown RBP21.04■□□□□ 0.96
COL9A3-207ENST00000467819 CMKLR1Q99788 373 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 SEMA6CQ9H3T2 930 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 RDH14Q9HBH5 336 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 NT5MQ9NPB1 228 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 KCTD5Q9NXV2 234 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 TAAR2Q9P1P5 351 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 ACSL6Q9UKU0 697 aa21.04■□□□□ 0.96
COL9A3-207ENST00000467819 ASH1LQ9NR48 2969 aaKnown RBP21.03■□□□□ 0.96
COL9A3-207ENST00000467819 RHPN2P1A8MT19 583 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 NVLO15381 856 aaKnown RBP21.03■□□□□ 0.96
COL9A3-207ENST00000467819 B4GAT1O43505 415 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 PGLSO95336 258 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 SERPINC1P01008 464 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 FGF1P05230 155 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 LIPCP11150 499 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 POLD2P49005 469 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 CDH6P55285 790 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 OR1D5P58170 312 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 B4GALNT1Q00973 533 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 KRT81Q14533 505 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 ARMC12Q5T9G4 340 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 DOK6Q6PKX4 331 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 SLC30A9Q6PML9 568 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 USP45Q70EL2 814 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 TEKT4Q8WW24 435 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 PATE1Q8WXA2 126 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 TMEM159Q96B96 161 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 SCRN2Q96FV2 425 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 THAP2Q9H0W7 228 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 CD84Q9UIB8 345 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 ANAPC7Q9UJX3 599 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 SDK2Q58EX2 2172 aa21.03■□□□□ 0.96
COL9A3-207ENST00000467819 J3QKU1 62 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 PSMD11O00231 422 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 ECEL1O95672 775 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 ALDH4A1P30038 563 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 SLC25A11Q02978 314 aaKnown RBP21.02■□□□□ 0.96
COL9A3-207ENST00000467819 ITKQ08881 620 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 BIRC2Q13490 618 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 C16orf72Q14CZ0 275 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 RALGPS1Q5JS13 557 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 USP53Q70EK8 1073 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 PIM3Q86V86 326 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 ZFAND4Q86XD8 727 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 CBARPQ8N350 705 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-207ENST00000467819 USP7Q93009 1102 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 MED8Q96G25 268 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 MCCC1Q96RQ3 725 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-207ENST00000467819 TRNAU1APQ9NX07 287 aaKnown RBP21.02■□□□□ 0.96
COL9A3-207ENST00000467819 FOXJ2Q9P0K8 574 aa21.02■□□□□ 0.96
COL9A3-207ENST00000467819 CPNE6O95741 557 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 PDHA1P08559 390 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 SSR1P43307 286 aaKnown RBP21.01■□□□□ 0.95
COL9A3-207ENST00000467819 GPR1P46091 355 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 CTBSQ01459 385 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 MMRN1Q13201 1228 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 NR1I3Q14994 352 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 HGSNATQ68CP4 663 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 CAVIN1Q6NZI2 390 aaKnown RBP21.01■□□□□ 0.95
COL9A3-207ENST00000467819 RFLNAQ6ZTI6 216 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 VASH2Q86V25 355 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 C17orf82Q86X59 251 aaPredicted RBP21.01■□□□□ 0.95
COL9A3-207ENST00000467819 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.01■□□□□ 0.95
COL9A3-207ENST00000467819 NIPA2Q8N8Q9 360 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 PIH1D2Q8WWB5 315 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 SMIM14Q96QK8 99 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 SEMA3CQ99985 751 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 NUDT22Q9BRQ3 303 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 NUP85Q9BW27 656 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 IP6K2Q9UHH9 426 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 ST14Q9Y5Y6 855 aa21.01■□□□□ 0.95
COL9A3-207ENST00000467819 B8ZZF3 427 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 C9orf172C9J069 976 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 MFSD11O43934 449 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 CD48P09326 243 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 ADCY8P40145 1251 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 FIGNQ5HY92 759 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 MANEAQ5SRI9 462 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 LRRC66Q68CR7 880 aa21■□□□□ 0.95
COL9A3-207ENST00000467819 ZNF438Q7Z4V0 828 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms