RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TPH1P17752 444 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 HNRNPA2B1P22626 353 aaKnown RBP15.17■□□□□ 0.02
NPHP4-205ENST00000466897 CD27P26842 260 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 TEAD1P28347 426 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 HADHAP40939 763 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 TERF1P54274 439 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SESN2P58004 480 aaPredicted RBP15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SEMG2Q02383 582 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 ACVR1Q04771 509 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SGCGQ13326 291 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 FGL2Q14314 439 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 ELF2Q15723 593 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 TEX35Q5T0J7 233 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SLC41A1Q8IVJ1 513 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 PPHLN1Q8NEY8 458 aaKnown RBP15.17■□□□□ 0.02
NPHP4-205ENST00000466897 FBXO25Q8TCJ0 367 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 STYXQ8WUJ0 223 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SIGLEC10Q96LC7 697 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 ORAI3Q9BRQ5 295 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 NAT9Q9BTE0 207 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 KIFC1Q9BW19 673 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 TSPYL1Q9H0U9 437 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 EPC1Q9H2F5 836 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 PIH1D1Q9NWS0 290 aaKnown RBP15.17■□□□□ 0.02
NPHP4-205ENST00000466897 SOX13Q9UN79 622 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 ARL5AQ9Y689 179 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 BPTFQ12830 3046 aa15.17■□□□□ 0.02
NPHP4-205ENST00000466897 ESYT3A0FGR9 886 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 PRR23AA6NEV1 266 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 TOR1BO14657 336 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 AVILO75366 819 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 FSBPO95073 299 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 PYGLP06737 847 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 RHOXF2BP0C7M4 288 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 MGAT1P26572 445 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 TNFRSF8P28908 595 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 DPP6P42658 865 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 PLTPP55058 493 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 SRSF5Q13243 272 aaKnown RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 ACOX1Q15067 660 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 TRADDQ15628 312 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 WDR45BQ5MNZ6 344 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 HENMT1Q5T8I9 393 aaKnown RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 ESRP1Q6NXG1 681 aaKnown RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 CEP128Q6ZU80 1094 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 Q6ZVL8 140 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 CCNJLQ8IV13 435 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 TP53I13Q8NBR0 393 aaPredicted RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 TMEM145Q8NBT3 493 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 FAM174AQ8TBP5 190 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 CENPTQ96BT3 561 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 NUS1Q96E22 293 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 LOXL4Q96JB6 756 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 HSPA12BQ96MM6 686 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 KLF6Q99612 283 aaPredicted RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 RHOXF2Q9BQY4 288 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 NLE1Q9NVX2 485 aaPredicted RBP15.16■□□□□ 0.02
NPHP4-205ENST00000466897 SYBUQ9NX95 663 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 SAMD15Q9P1V8 674 aa15.16■□□□□ 0.02
NPHP4-205ENST00000466897 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 A0A0U1RQS6 177 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 FAM237BA0A1B0GVD1 139 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 MEI4A8MW99 385 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 PRAMEF26H0Y7S4 382 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 STX7O15400 261 aaKnown RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 PAK4O96013 591 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 BPIP17213 487 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 ECHS1P30084 290 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 MAT2AP31153 395 aaKnown RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 AKT2P31751 481 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 HOXD12P35452 270 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 ETV3P41162 512 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 SIM2Q14190 667 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 LRRC14Q15048 493 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 SKIDA1Q1XH10 827 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 FNBP1LQ5T0N5 605 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 TSTD2Q5T7W7 516 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 PEAR1Q5VY43 1037 aaPredicted RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 LYSMD4Q5XG99 296 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 PDPK2PQ6A1A2 396 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 CENPUQ71F23 418 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 CEP68Q76N32 757 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 TMEM135Q86UB9 458 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 TMEFF1Q8IYR6 380 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 AGGF1Q8N302 714 aaeCLIP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 OR4K2Q8NGD2 314 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 SGSM3Q96HU1 749 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 SEMA4AQ9H3S1 761 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 EBF2Q9HAK2 575 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 TREX1Q9NSU2 369 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 MTRF1LQ9UGC7 380 aaKnown RBP15.15■□□□□ 0.02
NPHP4-205ENST00000466897 COQ6Q9Y2Z9 468 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 HS3ST3A1Q9Y663 406 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 TEX264Q9Y6I9 313 aa15.15■□□□□ 0.02
NPHP4-205ENST00000466897 USP1O94782 785 aa15.14■□□□□ 0.01
NPHP4-205ENST00000466897 TTC4O95801 387 aa15.14■□□□□ 0.01
NPHP4-205ENST00000466897 TSHRP16473 764 aa15.14■□□□□ 0.01
NPHP4-205ENST00000466897 SPAM1P38567 509 aa15.14■□□□□ 0.01
NPHP4-205ENST00000466897 DHX9Q08211 1270 aaKnown RBP15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms