RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 EXD2Q9NVH0 621 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 SH3GLB1Q9Y371 365 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 PTCH2Q9Y6C5 1203 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 MICAL3Q7RTP6 2002 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 NYNRINQ9P2P1 1898 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 ERI2A8K979 691 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 H2AFYO75367 372 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 IL10P22301 178 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 ATP5F1P24539 256 aaPredicted RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 CD151P48509 253 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 LHX1P48742 406 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 RAB39AQ14964 217 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 PFKFB4Q16877 469 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 NHSL2Q5HYW2 709 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 SAMD4BQ5PRF9 694 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 BTBD8Q5XKL5 378 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 NEPROQ6NW34 567 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 RALGPS2Q86X27 583 aaPredicted RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 CMTR2Q8IYT2 770 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 OR2T34Q8NGX1 318 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 OR2T3Q8NH03 318 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 SOCS4Q8WXH5 440 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 RNF145Q96MT1 663 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 TCF12Q99081 682 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 TBL1YQ9BQ87 522 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 CCDC90BQ9GZT6 254 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 AP5M1Q9H0R1 490 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 RBM22Q9NW64 420 aaKnown RBP eCLIP12.44□□□□□ -0.423e-6■■■□□ 17.5
HDAC4-208ENST00000463007 PLK2Q9NYY3 685 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 SLAMF8Q9P0V8 285 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 PAIP2BQ9ULR5 123 aaKnown RBP12.44□□□□□ -0.42
HDAC4-208ENST00000463007 SLC8A2Q9UPR5 921 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 KCTD3Q9Y597 815 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 FADS3Q9Y5Q0 445 aa12.44□□□□□ -0.42
HDAC4-208ENST00000463007 A0A087WXM4 84 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 K7EPI3 171 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 IPO13O94829 963 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 CYP11A1P05108 521 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 ALDOCP09972 364 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 NUP107P57740 925 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 MERTKQ12866 999 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 EPHX4Q8IUS5 362 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 CPSF7Q8N684 471 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PPHLN1Q8NEY8 458 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 TRPC4APQ8TEL6 797 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 HDAC10Q969S8 669 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PABPC5Q96DU9 382 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 TEKT5Q96M29 485 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 KLHL5Q96PQ7 755 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 GAD1Q99259 594 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 DNAI2Q9GZS0 605 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 ING2Q9H160 280 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 AKTIPQ9H8T0 292 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 SEMA4BQ9NPR2 832 aaPredicted RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 CASP8AP2Q9UKL3 1982 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 SLCO1B7G3V0H7 640 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 AKR1A1P14550 325 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PSMA4P25789 261 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 NPY2RP49146 381 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 DIO3P55073 304 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 TXNL4AP83876 142 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 DSC3Q14574 896 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 IMPG1Q17R60 797 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PKN3Q6P5Z2 889 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PIWIL4Q7Z3Z4 852 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 GPR180Q86V85 440 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 ATPAF2Q8N5M1 289 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 DDHD1Q8NEL9 900 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 GPR78Q96P69 363 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 COLEC11Q9BWP8 271 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 ZNF385DQ9H6B1 395 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 AGO3Q9H9G7 860 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 SUCOQ9UBS9 1254 aaKnown RBP12.43□□□□□ -0.42
HDAC4-208ENST00000463007 CDH9Q9ULB4 789 aa12.43□□□□□ -0.42
HDAC4-208ENST00000463007 PTGES3LE9PB15 166 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 H3BMQ9 156 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 CACNG3O60359 315 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 MGEA5O60502 916 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 NOL3O60936 208 aaKnown RBP12.42□□□□□ -0.42
HDAC4-208ENST00000463007 FASP25445 335 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 ARNTP27540 789 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 ALDH4A1P30038 563 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 IL1RL1Q01638 556 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 GALNT2Q10471 571 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 INTS6LQ5JSJ4 861 aaKnown RBP12.42□□□□□ -0.42
HDAC4-208ENST00000463007 GALNT18Q6P9A2 607 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 FUNDC1Q8IVP5 155 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 COG8Q96MW5 612 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 MRPL57Q9BQC6 102 aaKnown RBP12.42□□□□□ -0.42
HDAC4-208ENST00000463007 SLC25A23Q9BV35 468 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 GIT1Q9Y2X7 761 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 MYO16Q9Y6X6 1858 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 SH3PXD2BA1X283 911 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 ZNF623O75123 536 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 GFAPP14136 432 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 IST1P53990 364 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 SQLEQ14534 574 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 NR1D2Q14995 579 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 ADRM1Q16186 407 aa12.42□□□□□ -0.42
HDAC4-208ENST00000463007 ARL13BQ3SXY8 428 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms