RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 C3orf38Q5JPI3 329 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 LRRC66Q68CR7 880 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.92■□□□□ 0.62
VARS-220ENST00000461874 RNF214Q8ND24 703 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 CCL4L1Q8NHW4 92 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 HDAC11Q96DB2 347 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 SMIM14Q96QK8 99 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 TDRD1Q9BXT4 1180 aaKnown RBP18.92■□□□□ 0.62
VARS-220ENST00000461874 FRMD8Q9BZ67 464 aaPredicted RBP18.92■□□□□ 0.62
VARS-220ENST00000461874 ASCL3Q9NQ33 180 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 HAUS2Q9NVX0 235 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 TTLL3Q9Y4R7 772 aa18.92■□□□□ 0.62
VARS-220ENST00000461874 LRRD1A4D1F6 860 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 ZNF487B1APH4 448 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 NOBOXO60393 691 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PRLP01236 227 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 FUCA1P04066 466 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 HLA-DQB2P05538 268 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PCBP4P57723 403 aaKnown RBP18.91■□□□□ 0.62
VARS-220ENST00000461874 CCL7P80098 99 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PTSQ03393 145 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 SOWAHCQ53LP3 525 aaPredicted RBP18.91■□□□□ 0.62
VARS-220ENST00000461874 RAET1GQ6H3X3 334 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 RFLNAQ6ZTI6 216 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 SFTPA2Q8IWL1 248 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 RHOT2Q8IXI1 618 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 CCDC13Q8IYE1 715 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 CCNYQ8ND76 341 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 ZNF248Q8NDW4 579 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 GPBAR1Q8TDU6 330 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PRR11Q96HE9 360 aaPredicted RBP18.91■□□□□ 0.62
VARS-220ENST00000461874 SLC46A1Q96NT5 459 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 ABCG8Q9H221 673 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PRORYQ9H606 182 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 SYNDIG1Q9H7V2 258 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 CARS2Q9HA77 564 aaKnown RBP18.91■□□□□ 0.62
VARS-220ENST00000461874 THSD1Q9NS62 852 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 APPL1Q9UKG1 709 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 CHKBQ9Y259 395 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 PCDHGA8Q9Y5G5 932 aa18.91■□□□□ 0.62
VARS-220ENST00000461874 COL27A1Q8IZC6 1860 aaPredicted RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 A0A1W2PQM1 296 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 GOLGA6CA6NDK9 693 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 GOLGA6BA6NDN3 693 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 C3orf70A6NLC5 250 aaPredicted RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 RPLP0P05388 317 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 GOLGA6DP0CG33 693 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 GLB1P16278 677 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 ZNF30P17039 623 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 RBMS1P29558 406 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 EPHB1P54762 984 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 RPL26P61254 145 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 TLE3Q04726 772 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 C14orf28Q4W4Y0 310 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 CERCAMQ5T4B2 595 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 NLRP8Q86W28 1048 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 VSIG1Q86XK7 387 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 SPACA3Q8IXA5 215 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 PLD5Q8N7P1 536 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 WDR36Q8NI36 951 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 AP2M1Q96CW1 435 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 ZNF830Q96NB3 372 aaPredicted RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 GFM1Q96RP9 751 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 LGMNQ99538 433 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 DPEP2Q9H4A9 486 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 TRNAU1APQ9NX07 287 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 GOLGA6AQ9NYA3 693 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 CD84Q9UIB8 345 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 RPL26L1Q9UNX3 145 aaKnown RBP18.9■□□□□ 0.62
VARS-220ENST00000461874 SLC17A4Q9Y2C5 497 aa18.9■□□□□ 0.62
VARS-220ENST00000461874 SMG1Q96Q15 3661 aaKnown RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 CAPN8A6NHC0 703 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 B4DGG1 531 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 SOD1P00441 154 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 JCHAINP01591 159 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 PNLIPP16233 465 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 CA4P22748 312 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 GPR1P46091 355 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 STC1P52823 247 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 PPIDQ08752 370 aaKnown RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 TBX2Q13207 712 aaPredicted RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 HLTFQ14527 1009 aaKnown RBP eCLIP18.89■□□□□ 0.61
VARS-220ENST00000461874 LRRC38Q5VT99 294 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 SLC9A4Q6AI14 798 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 ADAMTSL4Q6UY14 1074 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 ZNF765Q7L2R6 523 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 B3GNT8Q7Z7M8 397 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 NRROSQ86YC3 692 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 CNGA4Q8IV77 575 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 PTCD2Q8WV60 388 aaKnown RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 SCAMP4Q969E2 229 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 LRRN3Q9H3W5 708 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 SUDS3Q9H7L9 328 aaPredicted RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 PCDH9Q9HC56 1237 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 SPATS2LQ9NUQ6 558 aaKnown RBP18.89■□□□□ 0.61
VARS-220ENST00000461874 DNPEPQ9ULA0 475 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 SUFUQ9UMX1 484 aa18.89■□□□□ 0.61
VARS-220ENST00000461874 CCDC187A0A096LP49 1063 aa18.88■□□□□ 0.61
VARS-220ENST00000461874 PMS2P1A4D2B8 440 aa18.88■□□□□ 0.61
VARS-220ENST00000461874 AKR1B15C9JRZ8 316 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms